BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0767800 Os03g0767800|AK066036
(210 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50830.1 | chr3:18894109-18895355 REVERSE LENGTH=204 222 1e-58
AT2G15970.1 | chr2:6950163-6951012 FORWARD LENGTH=198 201 3e-52
AT4G37220.1 | chr4:17515106-17515969 FORWARD LENGTH=203 200 4e-52
AT2G23680.1 | chr2:10066242-10067164 FORWARD LENGTH=190 144 5e-35
AT1G29390.1 | chr1:10286409-10287878 REVERSE LENGTH=227 65 3e-11
AT1G29395.1 | chr1:10288345-10289539 REVERSE LENGTH=226 60 9e-10
>AT3G50830.1 | chr3:18894109-18895355 REVERSE LENGTH=204
Length = 203
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/207 (54%), Positives = 144/207 (69%), Gaps = 5/207 (2%)
Query: 4 GFMSYLAMKTDXXXXXXXXXXXXXXXXXXLGVAARKLANHALVXXXXXXXXXXXXKWLAF 63
G M YLAMKTD L VAA+KL + + K+LA
Sbjct: 2 GRMDYLAMKTDDVDTVALVNSDMEE----LKVAAKKLFSD-VSKLGGLGFGVSFLKFLAS 56
Query: 64 FAAVYLLILDRTNWKTNMLTALLVPYIFFTLPGGLFSLLRGEIGKWIAIIAVILRLFFPR 123
FAA+YLLILDRTNWKT MLT+LL+PYIF +LP +F+ L G++GKWIA +AV+LRLFFP+
Sbjct: 57 FAAIYLLILDRTNWKTKMLTSLLIPYIFLSLPSVIFNFLSGDVGKWIAFVAVVLRLFFPK 116
Query: 124 HFPDWLELPGAVILLIAVAPNLFASTFRGDLVGIFICLIIGCYLLQEHIRASGGFRNAFR 183
HFPDWLE+PG++ILL+ V+P+ A RG +G I L IGCYLLQEHIRASGGFRN+F
Sbjct: 117 HFPDWLEMPGSLILLLVVSPHFLAHHIRGTWIGTVISLFIGCYLLQEHIRASGGFRNSFT 176
Query: 184 KGNGVSNSIGILLLFIYPVWALVLNFL 210
+ GVSN++GI+LL +YPVWAL++ +
Sbjct: 177 QPRGVSNTLGIILLLVYPVWALIVRVM 203
>AT2G15970.1 | chr2:6950163-6951012 FORWARD LENGTH=198
Length = 197
Score = 201 bits (510), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/174 (60%), Positives = 134/174 (77%), Gaps = 1/174 (0%)
Query: 33 LGVAARKLANHALVXXXXXXXXXXXXKWLAFFAAVYLLILDRTNWKTNMLTALLVPYIFF 92
L +AA+ LA HA +W+A AA+YLL+LDRTNWKTNMLT+LL+PYIFF
Sbjct: 24 LTIAAKNLATHAFTLTGLGFGTSVL-EWVASIAAIYLLVLDRTNWKTNMLTSLLIPYIFF 82
Query: 93 TLPGGLFSLLRGEIGKWIAIIAVILRLFFPRHFPDWLELPGAVILLIAVAPNLFASTFRG 152
+LP +F + RGEIGKWIA +AV+++LFFP+H ++LELP A++LL VAPNL A TFR
Sbjct: 83 SLPSLIFGIFRGEIGKWIAFVAVVVQLFFPKHAREYLELPVALVLLAVVAPNLIAGTFRD 142
Query: 153 DLVGIFICLIIGCYLLQEHIRASGGFRNAFRKGNGVSNSIGILLLFIYPVWALV 206
+G+ ICL IGCYLLQEHIRASGGFRNAF K NG+SN++GI+ L ++PVWAL+
Sbjct: 143 SWIGLAICLGIGCYLLQEHIRASGGFRNAFTKANGISNTVGIICLVVFPVWALI 196
>AT4G37220.1 | chr4:17515106-17515969 FORWARD LENGTH=203
Length = 202
Score = 200 bits (509), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 90/147 (61%), Positives = 115/147 (78%)
Query: 59 KWLAFFAAVYLLILDRTNWKTNMLTALLVPYIFFTLPGGLFSLLRGEIGKWIAIIAVILR 118
+W A A+YLLILDRTNWKT MLT LLVPYIFFTLP +F G+ GKWIA+IA+I+R
Sbjct: 51 QWAASIFAIYLLILDRTNWKTKMLTTLLVPYIFFTLPSVIFQFFSGDFGKWIALIAIIVR 110
Query: 119 LFFPRHFPDWLELPGAVILLIAVAPNLFASTFRGDLVGIFICLIIGCYLLQEHIRASGGF 178
LFFP+ FP+WLE+P A+IL++ V+P+L A T R VG ICL+I CYL EHI+ASGGF
Sbjct: 111 LFFPKEFPEWLEIPVALILIVVVSPSLIAWTLRESWVGAVICLVIACYLFHEHIKASGGF 170
Query: 179 RNAFRKGNGVSNSIGILLLFIYPVWAL 205
+N+F + NG+SN+IGI+ L +YPVW +
Sbjct: 171 KNSFTQKNGISNTIGIVALLVYPVWTI 197
>AT2G23680.1 | chr2:10066242-10067164 FORWARD LENGTH=190
Length = 189
Score = 144 bits (362), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 102/148 (68%), Gaps = 4/148 (2%)
Query: 59 KWLAFFAAVYLLILDRTNWK--TNMLTALLVPYIFFTLPGGLFSLLRGEIGKWIAIIAVI 116
+WLA AV+L+ILD+T WK N++ +LL PY+F +LP +F +LR +GKWIA++ VI
Sbjct: 32 RWLASIVAVFLMILDQTKWKYSNNIMASLLAPYLFSSLPIVIFQVLRNGVGKWIALLTVI 91
Query: 117 LRLFFPRHFPDWLELPGAVILLIAVAPNLFASTFRGDL--VGIFICLIIGCYLLQEHIRA 174
LRLF P HF + LE+PGA ILLI V P+ + FR DL G +CL+ YL+ +H +A
Sbjct: 92 LRLFLPNHFHESLEIPGATILLIVVTPSDIGAIFRDDLRYTGGDVCLLTSFYLINKHTKA 151
Query: 175 SGGFRNAFRKGNGVSNSIGILLLFIYPV 202
GG +N+F + + V+ SI + +LF+YP+
Sbjct: 152 CGGIKNSFTQKDKVTYSICLWILFVYPI 179
>AT1G29390.1 | chr1:10286409-10287878 REVERSE LENGTH=227
Length = 226
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 8/137 (5%)
Query: 59 KWLAFFAAVYLLILDRTNWKTNMLTALLVPYIFFTLPGGLFSLLRGEIGKWIAIIAVILR 118
+W++ + V L+ T + + +VP P G+ S ++GE G W A +A++ R
Sbjct: 87 QWISTISCVALMFAR----GTGIHKSFVVPLFALQAPMGIVSWMKGEYGIWAAFLALLTR 142
Query: 119 LFFPRHFPDWLELPGAVILLIAVAPNLFASTFRGDLVGIFICLIIGCYLLQEHIRASGGF 178
LFF FP LELP +LL+ VAP S RG G + L I C+L +H +G
Sbjct: 143 LFF--SFPVELELPFIALLLVIVAPYQVMS-IRGKQEGAILSLAISCFLAFQHFSRAGTL 199
Query: 179 RNAFRKGNGVSNSIGIL 195
+ AF + N V ++ I+
Sbjct: 200 QKAFDQ-NSVLATVAII 215
>AT1G29395.1 | chr1:10288345-10289539 REVERSE LENGTH=226
Length = 225
Score = 60.1 bits (144), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 7/128 (5%)
Query: 59 KWLAFFAAVYLLILDRTNWKTNMLTALLVPYIFFTLPGGLFSLLRGEIGKWIAIIAVILR 118
+W++ + + L++ T + +++VP P + + ++GE G W A +A+I R
Sbjct: 86 QWISTISCLALMLAR----GTGIHKSVVVPLFALHAPSSIVAWIKGEYGVWAAFLALIAR 141
Query: 119 LFFPRHFPDWLELPGAVILLIAVAPNLFASTFRGDLVGIFICLIIGCYLLQEHIRASGGF 178
LFF FP LELP +LL+ VAP + RG G I + I +L +H +G
Sbjct: 142 LFFT--FPGELELPFIALLLVIVAPYQVMN-IRGKQEGAIIAIAISGFLAFQHFSRAGSL 198
Query: 179 RNAFRKGN 186
A+ KG+
Sbjct: 199 EKAYEKGS 206
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.334 0.149 0.479
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,772,526
Number of extensions: 136403
Number of successful extensions: 403
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 396
Number of HSP's successfully gapped: 6
Length of query: 210
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 116
Effective length of database: 8,529,465
Effective search space: 989417940
Effective search space used: 989417940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 109 (46.6 bits)