Os03g0762000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Casein kinase II alpha subunit.
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Os03g0762000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Casein kinase II alpha subunit.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.5 | 0.295 | 9.13 | -1.05 | 0.245 | 0.475 | 0.544 | 1.31 | 0.454 | 3.76 | 0.1788 | 5370 | -- | -- |
| 40.4 | 0.296 | 9.15 | -1.04 | 0.25 | 0.685 | 0.554 | -- | 0.461 | 3.51 | 0.3683 | 5581 | -- | -- |
| 40.35 | 0.296 | 9.13 | -1.06 | 0.249 | 0.485 | -- | 1.32 | 0.453 | 4.07 | 0.1896 | 5369 | -- | -- |
| 40.77 | 0.297 | 9.15 | -1.07 | 0.239 | 0.781 | -- | -- | 0.441 | 4.05 | 0.4869 | 2635 | -- | -- |
| 43.76 | 0.308 | 9.13 | -1.05 | -- | 0.471 | -- | 1.42 | 0.457 | -- | 0.2078 | 5367 | -- | -- |
| 50.45 | 0.333 | 9.16 | -0.839 | 0.257 | -- | 0.681 | -- | 0.394 | 3.69 | -- | -- | -- | -- |
| 51.81 | 0.337 | 9.17 | -0.85 | 0.264 | -- | -- | -- | 0.39 | 4.04 | -- | -- | -- | -- |
| 44.02 | 0.309 | 9.16 | -1.07 | -- | 0.789 | -- | -- | 0.439 | -- | 0.4978 | 2629 | -- | -- |
| 66.92 | 0.381 | 9.12 | -- | 0.234 | 0.371 | -- | -- | 0.55 | 4.01 | -0.3258 | 6228 | -- | -- |
| 55.6 | 0.348 | 9.17 | -0.839 | -- | -- | -- | -- | 0.397 | -- | -- | -- | -- | -- |
| 70.85 | 0.394 | 9.14 | -- | 0.247 | -- | -- | -- | 0.485 | 4.1 | -- | -- | -- | -- |
| 70.28 | 0.39 | 9.13 | -- | -- | 0.387 | -- | -- | 0.555 | -- | -0.3576 | 6228 | -- | -- |
| 74.17 | 0.402 | 9.15 | -- | -- | -- | -- | -- | 0.49 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 38.72 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 15 |
| 2 | 38.72 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 15 |
| 5 | 38.75 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 15 |
| 10 | 38.89 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 2 | NA |
| 14 | 38.95 | precipitation | 0.1 | 4320 | < th | dose independent | sin | 1 | NA |
| 15 | 38.95 | precipitation | 0.1 | 4320 | < th | dose dependent | sin | 1 | NA |
| 16 | 38.96 | precipitation | 0.1 | 4320 | > th | dose independent | sin | 1 | NA |
| 19 | 38.98 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 16 | 1 |
| 31 | 39.19 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 14 | 3 |
| 47 | 39.32 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 10 | 10 |
| 50 | 39.32 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 10 | 10 |
| 58 | 39.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 7 |
| 59 | 39.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 10 | 10 |
| 60 | 39.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 7 |
| 105 | 39.42 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 109 | 39.42 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 1 |
| 118 | 39.45 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 12 |
| 119 | 39.45 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 15 |
| 138 | 39.51 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 3 | 17 |
| 157 | 39.55 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 1 |
| 179 | 39.58 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 1 | 19 |
| 197 | 39.63 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 210 | 39.67 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 16 | 3 |
| 213 | 39.67 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 16 | 3 |
| 215 | 39.67 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 10 | 7 |
| 222 | 39.69 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 16 | 3 |
| 245 | 39.74 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 9 | 10 |
| 247 | 39.75 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 281 | 39.76 | humidity | 60.0 | 14400 | > th | dose independent | no | NA | NA |
| 359 | 39.76 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 12 | 23 |
| 367 | 39.77 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 369 | 39.78 | humidity | 60.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 392 | 39.79 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 12 | 23 |
| 402 | 39.80 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 410 | 39.81 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 9 |
| 427 | 39.82 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 10 | 22 |
| 429 | 39.82 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 16 | 19 |
| 432 | 39.83 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 9 | 7 |
| 452 | 39.84 | humidity | 60.0 | 14400 | < th | dose independent | sin | 19 | NA |
| 454 | 39.84 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 568 | 39.89 | humidity | 50.0 | 14400 | > th | dose independent | sin | 12 | NA |
| 570 | 39.89 | humidity | 60.0 | 14400 | < th | dose independent | no | NA | NA |
| 657 | 39.90 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 680 | 39.91 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 815 | 40.00 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 846 | 40.03 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 858 | 40.03 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 16 |
| 941 | 40.11 | humidity | 70.0 | 14400 | < th | dose dependent | sin | 11 | NA |