BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0762000 Os03g0762000|AB036787
(145 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G50000.1 | chr3:18534487-18536743 FORWARD LENGTH=404 131 2e-31
AT5G67380.1 | chr5:26881156-26883383 REVERSE LENGTH=410 127 2e-30
AT2G23080.1 | chr2:9827228-9829343 FORWARD LENGTH=334 125 7e-30
AT2G23070.1 | chr2:9824162-9826871 REVERSE LENGTH=433 121 1e-28
>AT3G50000.1 | chr3:18534487-18536743 FORWARD LENGTH=404
Length = 403
Score = 131 bits (329), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 67/90 (74%)
Query: 56 MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEXX 115
MSKARVY DVNV+RPK+YWDYE+L VQWGEQDDYEVVRKVGRGKYSEVFEGIN+NNNE
Sbjct: 71 MSKARVYTDVNVIRPKDYWDYESLNVQWGEQDDYEVVRKVGRGKYSEVFEGINMNNNEKC 130
Query: 116 XXXXXXXXXXXXXXXXXXXLQNLCGGPNIV 145
LQNLCGGPNIV
Sbjct: 131 IIKILKPVKKKKIRREIKILQNLCGGPNIV 160
>AT5G67380.1 | chr5:26881156-26883383 REVERSE LENGTH=410
Length = 409
Score = 127 bits (318), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 61/91 (67%), Positives = 66/91 (72%)
Query: 55 GMSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEX 114
MSKARVY +VNV+RPK+YWDYE+L VQWGEQDDYEVVRKVGRGKYSEVFEGINVN+ E
Sbjct: 76 AMSKARVYTEVNVIRPKDYWDYESLIVQWGEQDDYEVVRKVGRGKYSEVFEGINVNSKEK 135
Query: 115 XXXXXXXXXXXXXXXXXXXXLQNLCGGPNIV 145
LQNLCGGPNIV
Sbjct: 136 CIIKILKPVKKKKIRREIKILQNLCGGPNIV 166
>AT2G23080.1 | chr2:9827228-9829343 FORWARD LENGTH=334
Length = 333
Score = 125 bits (314), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/90 (68%), Positives = 64/90 (71%)
Query: 56 MSKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEXX 115
MSKARVY DVNV+RPKEYWDYE+L VQWG QDDYEVVRKVGRGKYSEVFEG NVN NE
Sbjct: 1 MSKARVYTDVNVVRPKEYWDYESLVVQWGHQDDYEVVRKVGRGKYSEVFEGKNVNTNERC 60
Query: 116 XXXXXXXXXXXXXXXXXXXLQNLCGGPNIV 145
LQNLCGGPNIV
Sbjct: 61 VIKILKPVKKKKIKREIKILQNLCGGPNIV 90
>AT2G23070.1 | chr2:9824162-9826871 REVERSE LENGTH=433
Length = 432
Score = 121 bits (303), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/89 (66%), Positives = 64/89 (71%)
Query: 57 SKARVYADVNVLRPKEYWDYEALTVQWGEQDDYEVVRKVGRGKYSEVFEGINVNNNEXXX 116
SKARVYADVNV+RPK+YWDYE+L VQWG QDDYEVVRKVGRGKYSEVFEGI+ +NE
Sbjct: 100 SKARVYADVNVVRPKDYWDYESLAVQWGVQDDYEVVRKVGRGKYSEVFEGIHATDNEKCV 159
Query: 117 XXXXXXXXXXXXXXXXXXLQNLCGGPNIV 145
LQNLCGGPNIV
Sbjct: 160 IKILKPVKKKKIKREIKILQNLCGGPNIV 188
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.135 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,809,958
Number of extensions: 56613
Number of successful extensions: 328
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 324
Number of HSP's successfully gapped: 4
Length of query: 145
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 56
Effective length of database: 8,666,545
Effective search space: 485326520
Effective search space used: 485326520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 107 (45.8 bits)