Os03g0760600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : TIP41-like protein family protein.
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Os03g0760600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : TIP41-like protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.2 | 0.216 | 10.7 | -0.927 | 0.142 | 0.113 | -0.0348 | -1.84 | -0.324 | 19.5 | 20 | 1481 | -- | -- |
| 24.49 | 0.23 | 10.6 | -0.379 | 0.152 | 0.036 | 0.011 | -- | -0.173 | 19.4 | 19.29 | 4433 | -- | -- |
| 21.2 | 0.214 | 10.7 | -0.923 | 0.142 | 0.112 | -- | -1.83 | -0.323 | 19.5 | 19.94 | 1480 | -- | -- |
| 24.47 | 0.23 | 10.6 | -0.397 | 0.149 | 0.0482 | -- | -- | -0.179 | 19.8 | 16.7 | 4460 | -- | -- |
| 22.28 | 0.22 | 10.7 | -0.946 | -- | 0.121 | -- | -1.88 | -0.333 | -- | 20.3 | 1534 | -- | -- |
| 24.52 | 0.232 | 10.6 | -0.369 | 0.147 | -- | -0.0205 | -- | -0.167 | 19.4 | -- | -- | -- | -- |
| 24.52 | 0.232 | 10.6 | -0.369 | 0.147 | -- | -- | -- | -0.167 | 19.4 | -- | -- | -- | -- |
| 25.54 | 0.235 | 10.6 | -0.41 | -- | 0.0932 | -- | -- | -0.184 | -- | 13.64 | 5024 | -- | -- |
| 22.17 | 0.219 | 10.6 | -- | 0.15 | -0.342 | -- | -- | -0.0439 | 19.6 | 32.25 | 47520 | -- | -- |
| 25.67 | 0.237 | 10.6 | -0.371 | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
| 28.11 | 0.248 | 10.6 | -- | 0.15 | -- | -- | -- | -0.126 | 19.2 | -- | -- | -- | -- |
| 23.37 | 0.225 | 10.6 | -- | -- | -0.341 | -- | -- | -0.0454 | -- | 32.22 | 47520 | -- | -- |
| 29.31 | 0.253 | 10.6 | -- | -- | -- | -- | -- | -0.128 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.80 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 5 |
| 2 | 18.84 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 22 | 7 |
| 5 | 18.92 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 24 | 1 |
| 12 | 19.04 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 24 | 1 |
| 13 | 19.04 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 14 | 19.06 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 23 | 8 |
| 21 | 19.17 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 2 |
| 23 | 19.20 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 4 |
| 61 | 19.49 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 7 |
| 64 | 19.50 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 65 | 19.50 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 66 | 19.50 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 8 |
| 79 | 19.53 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 84 | 19.54 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 95 | 19.58 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 98 | 19.58 | radiation | 1.0 | 4320 | < th | dose dependent | rect. | 18 | 12 |
| 99 | 19.59 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 100 | 19.59 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 113 | 19.59 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 19 | 7 |
| 197 | 19.86 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 7 |
| 204 | 19.89 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 21 | 5 |
| 216 | 19.95 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 256 | 20.00 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 10 |
| 258 | 20.00 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 261 | 20.01 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 282 | 20.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 4 |
| 297 | 20.02 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 314 | 20.03 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 316 | 20.03 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 7 | NA |
| 320 | 20.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 8 |
| 330 | 20.03 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 17 |
| 344 | 20.04 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 347 | 20.04 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 23 | NA |
| 397 | 20.05 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 398 | 20.05 | radiation | 1.0 | 43200 | < th | dose dependent | no | NA | NA |
| 399 | 20.05 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 418 | 20.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 12 |
| 498 | 20.05 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 23 |
| 508 | 20.06 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 509 | 20.06 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 12 |
| 516 | 20.06 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 18 |
| 521 | 20.06 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 21 |
| 544 | 20.07 | radiation | 1.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 546 | 20.07 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 5 | 10 |
| 566 | 20.07 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 24 | 3 |
| 655 | 20.09 | radiation | 1.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 657 | 20.09 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 675 | 20.09 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 18 |
| 688 | 20.09 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 733 | 20.11 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 2 |
| 734 | 20.11 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 2 |
| 808 | 20.12 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 934 | 20.16 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 24 | 1 |
| 952 | 20.16 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 24 | 1 |
| 956 | 20.16 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 974 | 20.17 | radiation | 1.0 | 43200 | < th | dose independent | no | NA | NA |