BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0760600 Os03g0760600|AK103511
         (290 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G34270.1  | chr4:16404138-16406153 REVERSE LENGTH=291          321   3e-88

>AT4G34270.1 | chr4:16404138-16406153 REVERSE LENGTH=291
          Length = 290

 Score =  321 bits (822), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 156/267 (58%), Positives = 198/267 (74%), Gaps = 5/267 (1%)

Query: 27  GVRVKGWVIRSHNGPILNSASLQLFEDKLQTTHLPEMVFGESFLSLQHAQTGIRLYFNAL 86
           G+R+  W I +  G IL S +++ +E KL+T+HLPEMVFGE+ L L+H  +  +++FNA 
Sbjct: 24  GLRIHDWEIETLRGTILTSLAVEEWEKKLKTSHLPEMVFGENALVLKHLGSNTKIHFNAF 83

Query: 87  DALKAWKHXXXXXXXXXXXXKWKFRSKPSDQVILDYDYTFTTPYNGSDALVQNPDSIQTS 146
           DAL  WK             +WKFRSKPS QVILDYDYTFTTPY GS+ + ++ ++++  
Sbjct: 84  DALAGWKQEGLPPVEVPAAAQWKFRSKPSQQVILDYDYTFTTPYCGSEVVEKDKETVEAK 143

Query: 147 LDEPR---NLCWEDSEDRIDLVALSAKEPILFYDEVILYEDELADNGISFLTVRVRVMPT 203
            + P+    L WE+ ED+IDL ALS KEPILFYDEV+LYEDELADNG+S LTV+VRVMP+
Sbjct: 144 AN-PKGEATLQWENCEDQIDLAALSLKEPILFYDEVVLYEDELADNGVSLLTVKVRVMPS 202

Query: 204 GWFLLLRFWLRVDGVLMRLRDTRVYCSFGSDEAKPIVLRECCWREATFASLSAKGYPSDS 263
            WFLLLRFWLRVDGVLMRLR+TR++  FG DEA P VLRE CWREATF SLSAKGYP D 
Sbjct: 203 SWFLLLRFWLRVDGVLMRLRETRMHYRFGEDEA-PTVLRENCWREATFQSLSAKGYPVDL 261

Query: 264 AAYGDPNLIAHKLPVVMQKIQKLKLPN 290
           A + DP+ I+ +LPV+    QKLK+P+
Sbjct: 262 AVWSDPSSISQRLPVIKHTTQKLKIPS 288



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,918,683
Number of extensions: 231565
Number of successful extensions: 427
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 425
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 192
Effective length of database: 8,419,801
Effective search space: 1616601792
Effective search space used: 1616601792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)