FiT-DB / Search/ Help/ Sample detail

Os03g0757400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.29 (0.0176) R2 : 0.0136
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0928 (0.037) R2dN8 : 0.0176 R2N8 : 0.0136
σ : 0.331
deviance : 50.24
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
34.72 0.277 9.26 -0.247 0.325 0.503 -0.0205 0.865 0.154 14.1 0.2775 5300 -- --
34.99 0.275 9.27 -0.269 0.324 0.677 -0.0308 -- 0.161 14.1 0.3727 5339 -- --
34.7 0.274 9.26 -0.247 0.323 0.512 -- 0.837 0.154 14.1 0.2738 5343 -- --
34.98 0.275 9.27 -0.266 0.322 0.665 -- -- 0.16 14.1 0.3721 5340 -- --
40.96 0.298 9.26 -0.258 -- 0.524 -- 0.748 0.149 -- 0.2232 5496 -- --
44.15 0.311 9.29 -0.0543 0.313 -- -0.134 -- 0.093 14 -- -- -- --
44.21 0.311 9.29 -0.0583 0.313 -- -- -- 0.0923 14.1 -- -- -- --
40.03 0.295 9.28 -0.407 -- 0.651 -- -- 0.13 -- 0.8969 20457 -- --
36.64 0.282 9.27 -- 0.319 0.585 -- -- 0.168 13.9 0.3571 5361 -- --
50.1 0.331 9.29 -0.0713 -- -- -- -- 0.0849 -- -- -- -- --
44.3 0.311 9.29 -- 0.314 -- -- -- 0.0988 14.1 -- -- -- --
42.82 0.305 9.27 -- -- 0.575 -- -- 0.177 -- 0.2851 5520 -- --
50.24 0.331 9.29 -- -- -- -- -- 0.0928 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.54 radiation 1.0 43200 < th dose dependent rect. 20 7
2 33.66 humidity 60.0 14400 < th dose independent rect. 17 16
3 33.69 radiation 1.0 43200 < th dose dependent rect. 20 5
5 33.78 humidity 60.0 14400 > th dose independent rect. 17 2
6 33.83 humidity 60.0 14400 > th dose independent rect. 17 4
12 33.85 humidity 60.0 14400 > th dose independent rect. 17 13
14 33.86 humidity 60.0 14400 > th dose independent rect. 17 9
15 33.86 humidity 60.0 14400 > th dose independent rect. 17 11
20 33.90 humidity 60.0 14400 < th dose independent rect. 17 1
41 34.17 wind 9.0 43200 > th dose dependent rect. 20 1
63 34.60 humidity 60.0 14400 < th dose dependent rect. 16 18
64 34.63 humidity 70.0 14400 < th dose dependent rect. 17 15
65 34.65 humidity 50.0 14400 > th dose independent rect. 16 19
82 34.72 humidity 70.0 14400 < th dose dependent rect. 17 3
118 34.85 wind 9.0 43200 > th dose independent rect. 20 1
122 34.92 wind 9.0 43200 < th dose independent rect. 20 1
156 35.02 humidity 60.0 4320 > th dose independent rect. 13 1
162 35.07 precipitation 0.1 43200 > th dose dependent rect. 19 2
165 35.08 humidity 50.0 14400 < th dose independent rect. 15 19
169 35.14 humidity 50.0 4320 > th dose dependent rect. 18 1
171 35.18 precipitation 0.1 14400 > th dose dependent rect. 17 5
191 35.22 humidity 50.0 14400 < th dose independent sin 11 NA
192 35.22 precipitation 0.1 14400 > th dose independent rect. 17 5
194 35.23 precipitation 0.1 43200 < th dose independent rect. 17 1
197 35.23 precipitation 0.1 43200 < th dose dependent rect. 17 1
212 35.25 precipitation 0.1 14400 < th dose independent rect. 17 5
213 35.25 precipitation 0.1 14400 < th dose dependent rect. 17 5
223 35.28 precipitation 0.1 14400 > th dose dependent rect. 11 12
233 35.31 precipitation 0.1 4320 < th dose independent rect. 13 6
235 35.31 precipitation 0.1 4320 < th dose dependent rect. 13 6
239 35.32 precipitation 0.1 43200 > th dose independent rect. 17 1
240 35.32 precipitation 0.1 43200 > th dose dependent rect. 17 1
244 35.34 precipitation 0.1 4320 < th dose independent rect. 4 14
250 35.34 precipitation 0.1 4320 < th dose dependent rect. 4 14
251 35.35 precipitation 0.1 4320 > th dose independent rect. 13 6
257 35.37 humidity 60.0 4320 < th dose independent rect. 13 1
280 35.40 precipitation 0.1 4320 > th dose independent rect. 4 14
289 35.41 precipitation 0.1 4320 > th dose dependent sin 0 NA
308 35.46 humidity 60.0 14400 > th dose independent sin 13 NA
334 35.47 precipitation 0.1 14400 > th dose dependent sin 18 NA
345 35.48 temperature 25.0 4320 > th dose dependent rect. 7 1
367 35.51 humidity 90.0 14400 > th dose dependent rect. 21 1
388 35.52 precipitation 0.1 4320 > th dose dependent rect. 5 17
409 35.55 precipitation 0.1 14400 > th dose dependent rect. 13 5
410 35.55 precipitation 0.1 14400 > th dose dependent rect. 11 7
415 35.55 precipitation 0.1 4320 > th dose dependent rect. 5 22
437 35.58 precipitation 0.1 4320 > th dose independent rect. 8 11
452 35.59 precipitation 0.1 4320 < th dose independent rect. 8 11
459 35.59 precipitation 0.1 4320 < th dose dependent rect. 8 11
504 35.64 precipitation 0.1 14400 > th dose independent rect. 11 11
505 35.64 precipitation 0.1 14400 < th dose independent rect. 11 11
511 35.64 precipitation 0.1 14400 < th dose dependent rect. 11 11
517 35.64 precipitation 0.1 4320 > th dose dependent rect. 19 23
548 35.66 precipitation 0.1 4320 > th dose dependent rect. 1 21
553 35.67 atmosphere 995.0 43200 < th dose dependent rect. 15 1
582 35.69 precipitation 0.1 4320 > th dose independent sin 22 NA
583 35.69 precipitation 0.1 4320 < th dose independent sin 22 NA
588 35.69 precipitation 0.1 4320 < th dose dependent sin 22 NA
643 35.73 humidity 80.0 43200 > th dose independent rect. 23 1
660 35.73 atmosphere 995.0 43200 < th dose dependent rect. 15 7
667 35.73 precipitation 0.1 4320 > th dose dependent rect. 13 18
668 35.73 precipitation 0.1 4320 > th dose dependent rect. 13 20
710 35.76 humidity 90.0 14400 < th dose independent rect. 21 1
738 35.77 precipitation 0.1 4320 > th dose dependent rect. 15 23
759 35.79 precipitation 0.1 4320 > th dose dependent no NA NA
771 35.80 temperature 30.0 4320 < th dose independent rect. 14 2
779 35.80 temperature 30.0 4320 > th dose independent rect. 18 17
780 35.80 temperature 30.0 4320 < th dose independent rect. 18 17
791 35.81 atmosphere 995.0 43200 < th dose independent rect. 15 1
824 35.81 precipitation 0.1 4320 > th dose dependent rect. 15 18
828 35.82 humidity 90.0 14400 > th dose independent rect. 21 1
850 35.82 precipitation 0.1 4320 > th dose dependent rect. 15 16
904 35.85 temperature 30.0 4320 > th dose independent rect. 14 1
907 35.85 temperature 30.0 4320 < th dose independent rect. 8 2
909 35.85 atmosphere 995.0 43200 > th dose independent rect. 15 2
910 35.85 temperature 30.0 4320 < th dose independent rect. 6 4
959 35.86 temperature 30.0 4320 < th dose independent rect. 20 14
992 35.88 humidity 70.0 14400 < th dose dependent sin 12 NA