FiT-DB / Search/ Help/ Sample detail

Os03g0756800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function UPF0139 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.2 (0.0185) R2 : 0.0484
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.187 (0.0389) R2dN8 : 0.0625 R2N8 : 0.0484
σ : 0.348
deviance : 55.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
32.89 0.269 13.3 0.466 0.479 -0.762 -0.207 -1.37 0.0319 1.03 7.396 5846 -- --
34.5 0.274 13.2 0.375 0.48 -0.529 -0.206 -- 0.109 0.929 7.399 5787 -- --
33.07 0.268 13.3 0.475 0.479 -0.766 -- -1.37 0.0324 0.997 7.387 5845 -- --
34.56 0.274 13.2 0.377 0.478 -0.546 -- -- 0.103 0.94 7.1 5690 -- --
46.88 0.319 13.2 0.505 -- -0.816 -- -1.42 0.0314 -- 7.3 5540 -- --
40.07 0.297 13.2 0.11 0.488 -- -0.245 -- 0.192 1.02 -- -- -- --
40.32 0.297 13.2 0.119 0.488 -- -- -- 0.193 0.98 -- -- -- --
48.11 0.323 13.2 0.409 -- -0.615 -- -- 0.115 -- 6.831 5477 -- --
37.37 0.285 13.2 -- 0.47 -0.364 -- -- 0.129 0.908 6.7 5570 -- --
55.12 0.347 13.2 0.137 -- -- -- -- 0.203 -- -- -- -- --
40.69 0.298 13.2 -- 0.49 -- -- -- 0.18 0.99 -- -- -- --
50.86 0.332 13.2 -- -- -0.458 -- -- 0.123 -- 5.992 5385 -- --
55.62 0.348 13.2 -- -- -- -- -- 0.187 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 32.00 temperature 10.0 1440 > th dose dependent rect. 18 1
7 32.16 temperature 30.0 1440 < th dose dependent rect. 18 2
28 32.43 wind 5.0 4320 > th dose dependent rect. 18 3
52 32.70 wind 7.0 4320 < th dose independent rect. 17 4
64 32.84 wind 5.0 4320 > th dose dependent rect. 17 11
66 32.86 wind 7.0 4320 > th dose independent rect. 17 4
72 32.91 wind 5.0 4320 > th dose dependent rect. 17 8
91 33.07 wind 5.0 43200 < th dose independent rect. 18 12
93 33.07 wind 7.0 43200 > th dose dependent rect. 17 13
96 33.08 wind 5.0 4320 > th dose dependent rect. 17 18
102 33.11 precipitation 0.1 43200 > th dose dependent rect. 20 1
113 33.14 wind 5.0 43200 > th dose independent rect. 18 12
119 33.15 wind 9.0 43200 > th dose independent rect. 16 14
127 33.17 wind 5.0 43200 > th dose independent rect. 17 14
130 33.18 wind 9.0 43200 > th dose independent rect. 14 16
132 33.19 wind 9.0 43200 < th dose independent rect. 16 14
133 33.19 wind 9.0 43200 < th dose independent rect. 14 16
151 33.23 wind 5.0 43200 > th dose independent sin 12 NA
163 33.24 wind 7.0 43200 > th dose dependent rect. 17 1
165 33.25 wind 5.0 43200 < th dose independent sin 12 NA
173 33.25 wind 9.0 43200 > th dose dependent rect. 14 16
222 33.34 temperature 15.0 720 > th dose dependent sin 15 NA
224 33.35 wind 9.0 43200 > th dose independent sin 12 NA
229 33.36 temperature 20.0 4320 > th dose independent rect. 21 1
231 33.36 wind 9.0 43200 > th dose dependent rect. 14 5
233 33.37 wind 9.0 43200 > th dose independent rect. 14 9
235 33.37 wind 7.0 43200 > th dose independent rect. 17 22
243 33.38 wind 9.0 43200 < th dose independent sin 12 NA
246 33.38 wind 7.0 43200 < th dose independent rect. 17 22
252 33.39 wind 7.0 14400 > th dose independent rect. 6 3
254 33.39 wind 7.0 4320 < th dose independent rect. 17 8
264 33.40 wind 7.0 4320 < th dose independent rect. 17 11
269 33.41 atmosphere 1005.0 14400 < th dose independent rect. 10 1
293 33.44 wind 9.0 43200 < th dose independent rect. 14 8
297 33.44 wind 7.0 43200 > th dose dependent sin 12 NA
307 33.46 wind 9.0 43200 > th dose independent rect. 14 4
346 33.50 temperature 20.0 720 > th dose dependent rect. 16 18
351 33.51 wind 9.0 43200 > th dose independent rect. 14 12
352 33.51 wind 9.0 43200 < th dose independent rect. 14 12
377 33.54 wind 9.0 43200 < th dose independent rect. 14 4
408 33.57 temperature 20.0 4320 < th dose independent rect. 21 1
411 33.57 wind 7.0 4320 > th dose independent rect. 17 11
429 33.58 wind 9.0 43200 > th dose dependent rect. 14 8
433 33.58 temperature 15.0 720 > th dose dependent rect. 13 16
491 33.63 wind 5.0 43200 > th dose dependent rect. 17 22
516 33.66 wind 9.0 43200 > th dose independent rect. 17 1
526 33.67 radiation 30.0 4320 < th dose independent rect. 7 1
527 33.67 wind 7.0 14400 < th dose independent rect. 6 3
543 33.68 wind 7.0 4320 < th dose independent sin 14 NA
557 33.68 wind 7.0 14400 > th dose dependent rect. 20 14
564 33.69 wind 5.0 4320 > th dose independent rect. 17 17
567 33.69 wind 5.0 4320 > th dose dependent sin 13 NA
576 33.70 precipitation 0.1 43200 > th dose independent rect. 20 1
591 33.71 precipitation 0.1 43200 < th dose independent rect. 20 1
597 33.71 precipitation 0.1 43200 < th dose dependent rect. 20 1
613 33.72 wind 7.0 4320 < th dose independent rect. 15 18
621 33.72 wind 9.0 43200 > th dose dependent rect. 14 12
627 33.73 wind 9.0 43200 < th dose independent rect. 17 1
642 33.74 wind 7.0 4320 > th dose independent rect. 15 13
668 33.76 wind 7.0 43200 < th dose independent rect. 3 12
681 33.77 wind 7.0 43200 > th dose independent rect. 3 12
748 33.80 wind 7.0 14400 > th dose independent rect. 20 14
799 33.83 temperature 20.0 720 > th dose independent sin 15 NA
811 33.83 wind 7.0 4320 > th dose independent rect. 15 18
818 33.83 temperature 10.0 1440 > th dose dependent rect. 7 16
843 33.85 wind 7.0 4320 > th dose independent sin 13 NA
872 33.86 wind 5.0 43200 < th dose independent rect. 20 4
876 33.86 wind 1.0 14400 < th dose dependent rect. 20 2
905 33.87 wind 7.0 14400 < th dose independent rect. 20 14
929 33.88 radiation 30.0 4320 < th dose independent rect. 2 6
932 33.88 temperature 20.0 720 > th dose independent rect. 13 15
941 33.88 wind 7.0 14400 > th dose dependent rect. 20 9
983 33.90 wind 1.0 14400 > th dose independent rect. 20 2