BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0756800 Os03g0756800|AK120423
         (113 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G07960.1  | chr5:2542350-2543253 FORWARD LENGTH=108            139   3e-34

>AT5G07960.1 | chr5:2542350-2543253 FORWARD LENGTH=108
          Length = 107

 Score =  139 bits (350), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 62/97 (63%), Positives = 73/97 (75%)

Query: 17  VNDPRQPSTARQYTPPKLSPQDLPIDYXXXXXXXXXXXXXMLRYKVCSWIAIIFCAQSLV 76
           VNDPRQPS A+ Y P  ++P+DLP+DY             M RYK+CSW+AIIFCAQSL 
Sbjct: 11  VNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLA 70

Query: 77  NMKNFENDLKQLSMAFMFAVMGLVTNYLGPPRPGTKR 113
           NM+N ENDLKQ+SMA MFA+MGLVTNYLGP RP TK+
Sbjct: 71  NMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATKK 107



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,072,593
Number of extensions: 56632
Number of successful extensions: 95
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 1
Length of query: 113
Length of database: 11,106,569
Length adjustment: 82
Effective length of query: 31
Effective length of database: 8,858,457
Effective search space: 274612167
Effective search space used: 274612167
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 104 (44.7 bits)