Os03g0756000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 60S ribosomal protein L13a-4.
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Os03g0756000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 60S ribosomal protein L13a-4.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 64.35 | 0.377 | 12.8 | 0.935 | 0.649 | 0.724 | 0.57 | 1.56 | 0.154 | 19.3 | 16.33 | 114 | -- | -- |
| 67.78 | 0.383 | 12.7 | 0.951 | 0.643 | 0.56 | 0.43 | -- | 0.163 | 18.9 | 13.16 | 126 | -- | -- |
| 65.1 | 0.376 | 12.8 | 0.925 | 0.639 | 0.715 | -- | 1.42 | 0.16 | 19.3 | 15.82 | 125 | -- | -- |
| 68.16 | 0.385 | 12.7 | 0.942 | 0.642 | 0.593 | -- | -- | 0.162 | 19.3 | 10.06 | 127 | -- | -- |
| 73.79 | 0.4 | 12.7 | 0.912 | -- | 0.805 | -- | 0.959 | 0.111 | -- | -6.085 | 680 | -- | -- |
| 72.44 | 0.399 | 12.7 | 0.949 | 0.689 | -- | 0.71 | -- | 0.188 | 17.6 | -- | -- | -- | -- |
| 73.65 | 0.402 | 12.7 | 0.945 | 0.694 | -- | -- | -- | 0.191 | 17.7 | -- | -- | -- | -- |
| 74.61 | 0.402 | 12.7 | 0.88 | -- | 0.807 | -- | -- | 0.1 | -- | -6.995 | 697 | -- | -- |
| 91.07 | 0.444 | 12.8 | -- | 0.604 | 0.583 | -- | -- | 0.0672 | 19.4 | 10.51 | 170 | -- | -- |
| 98.67 | 0.464 | 12.7 | 0.923 | -- | -- | -- | -- | 0.175 | -- | -- | -- | -- | -- |
| 97.18 | 0.461 | 12.8 | -- | 0.679 | -- | -- | -- | 0.0858 | 17.8 | -- | -- | -- | -- |
| 95.19 | 0.454 | 12.8 | -- | -- | 0.847 | -- | -- | -0.0036 | -- | -5.257 | 698 | -- | -- |
| 121.14 | 0.514 | 12.8 | -- | -- | -- | -- | -- | 0.0722 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 60.19 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 2 | 60.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 15 |
| 5 | 60.50 | temperature | 15 | 10 | > th | dose dependent | rect. | 9 | 17 |
| 12 | 60.87 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 23 | 61.27 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 31 | 61.46 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 8 |
| 32 | 61.48 | temperature | 25 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 48 | 61.76 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 56 | 61.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 7 |
| 60 | 61.96 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 61 | 61.96 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 79 | 62.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 9 |
| 82 | 62.12 | temperature | 10 | 90 | > th | dose dependent | sin | 1 | NA |
| 147 | 62.40 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 163 | 62.46 | temperature | 25 | 270 | > th | dose dependent | sin | 7 | NA |
| 189 | 62.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 16 |
| 222 | 62.72 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 255 | 62.83 | temperature | 30 | 30 | < th | dose dependent | rect. | 4 | 16 |
| 342 | 63.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 414 | 63.35 | radiation | 40 | 270 | > th | dose independent | sin | 11 | NA |
| 462 | 63.54 | radiation | 40 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 546 | 63.83 | radiation | 30 | 270 | > th | dose dependent | sin | 11 | NA |
| 721 | 64.11 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 10 |
| 747 | 64.14 | radiation | 1 | 270 | > th | dose dependent | sin | 6 | NA |
| 758 | 64.16 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 767 | 64.18 | radiation | 10 | 270 | > th | dose dependent | sin | 8 | NA |
| 816 | 64.28 | radiation | 40 | 90 | < th | dose independent | sin | 5 | NA |
| 914 | 64.44 | radiation | 40 | 270 | < th | dose independent | rect. | 9 | 22 |
| 959 | 64.50 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 965 | 64.52 | radiation | 40 | 270 | < th | dose independent | sin | 11 | NA |
| 967 | 64.52 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 2 | 7 |
| 986 | 64.55 | radiation | 40 | 90 | > th | dose independent | sin | 6 | NA |
| 987 | 64.55 | radiation | 20 | 90 | > th | dose dependent | sin | 4 | NA |
| 989 | 64.55 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 24 | 7 |