BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0756000 Os03g0756000|AK106078
(206 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G48760.1 | chr5:19771315-19772686 REVERSE LENGTH=207 349 6e-97
AT3G24830.1 | chr3:9064613-9065871 FORWARD LENGTH=207 345 1e-95
AT4G13170.1 | chr4:7655133-7656542 REVERSE LENGTH=207 343 3e-95
AT3G07110.2 | chr3:2252092-2253332 FORWARD LENGTH=208 339 5e-94
AT1G78630.1 | chr1:29575997-29577406 FORWARD LENGTH=242 55 2e-08
>AT5G48760.1 | chr5:19771315-19772686 REVERSE LENGTH=207
Length = 206
Score = 349 bits (895), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 166/206 (80%), Positives = 181/206 (87%)
Query: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
MVSGSG+C+ RVVVDARHHMLGRLASI AKELLNGQ+VV+VRCEEIC+SGGLVRQKMKY+
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
RFLRKRMNTKPSHGPIHFR+P+KI WRTVRGMIPHKTKRG AALARLK YEGVP PYD+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120
Query: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIXXXXXXXXXXXXVAYDRRKQLA 180
KRMVIPDALKVLRLQ GHKYCLLG+LS EVGWN+YDTI V Y+R+KQL
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLN 180
Query: 181 KLRVKAEKAAEEKLGPQLEILAPIKY 206
KLRVKAEK AEEKLG QL+ILAP+KY
Sbjct: 181 KLRVKAEKVAEEKLGAQLDILAPVKY 206
>AT3G24830.1 | chr3:9064613-9065871 FORWARD LENGTH=207
Length = 206
Score = 345 bits (884), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 164/206 (79%), Positives = 178/206 (86%)
Query: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
MVSGSG+C+ RVVVDARHHM GRLASIIAKELLNGQ VVVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
RFLRKRMNTKPSHGPIHFR+P+KI WRTVRGMIPHKTKRG AALARLK +EGVPPPYD+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120
Query: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIXXXXXXXXXXXXVAYDRRKQLA 180
KRMVIPDALKVLRLQ GHKYCLLG+LS EVGWN+YDTI Y+R+KQL
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLT 180
Query: 181 KLRVKAEKAAEEKLGPQLEILAPIKY 206
KLR KAEK AEEKLG QL++LA IKY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLASIKY 206
>AT4G13170.1 | chr4:7655133-7656542 REVERSE LENGTH=207
Length = 206
Score = 343 bits (881), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 162/206 (78%), Positives = 178/206 (86%)
Query: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
MVSGSG+CA RVVVD RHHMLGRLAS AKELLNGQ VVVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
RFLRKRMNTKPSHGPIHFR+P+KI WRTVRGMIPHKTKRG AALARLK +EG+PPPYD+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120
Query: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIXXXXXXXXXXXXVAYDRRKQLA 180
KRMVIPDALKVLRLQ GHKYCLLG+LS EVGWN+YDTI V Y+R+KQL
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLN 180
Query: 181 KLRVKAEKAAEEKLGPQLEILAPIKY 206
KLR KAEK AEE+LG QL++LAP+KY
Sbjct: 181 KLRTKAEKVAEERLGSQLDVLAPVKY 206
>AT3G07110.2 | chr3:2252092-2253332 FORWARD LENGTH=208
Length = 207
Score = 339 bits (870), Expect = 5e-94, Method: Compositional matrix adjust.
Identities = 160/207 (77%), Positives = 180/207 (86%), Gaps = 1/207 (0%)
Query: 1 MVSGSGVCAPRVVVDARHHMLGRLASIIAKELLNGQRVVVVRCEEICMSGGLVRQKMKYL 60
MVSGSG+CA RVVVDARHHMLGRLAS++AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPYDRT 120
RFLRKRMNTKPSHGPIHFR+P+KI WRTVRGMIPHKTKRG ALARLK +EGVP PYD+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120
Query: 121 KRMVIPDALKVLRLQPGHKYCLLGQLSKEVGWNYYDTIXXXXXXXXXXXXVA-YDRRKQL 179
KRMV+PDALKVLRLQ GHKYCLLG+LS EVGWN+YDTI A Y+R+KQL
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKQELENKRKERAQAVYERKKQL 180
Query: 180 AKLRVKAEKAAEEKLGPQLEILAPIKY 206
+KLR KAEK AEEKLG QL++LAP+KY
Sbjct: 181 SKLRAKAEKVAEEKLGSQLDVLAPVKY 207
>AT1G78630.1 | chr1:29575997-29577406 FORWARD LENGTH=242
Length = 241
Score = 55.1 bits (131), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 10 PRVVVDARHHMLGRLASIIAKELLN------------GQRVVVVRCEEICMSGGLVRQKM 57
P VVDA +LGRLAS IA + G V+VV E++ +SG QK+
Sbjct: 104 PWFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKL 163
Query: 58 KYLRFLRKRMNTKPSHGPIHFRSPAKILWRTVRGMIPHKTKRGEAALARLKAYEGVPPPY 117
R T + + R P +I+ VRGM+P K + G A LK Y+G P+
Sbjct: 164 YRRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLP-KGRLGRALFNHLKVYKGPDHPH 222
Query: 118 DRTKRMVIPDALKVLRLQ 135
+ K + +P K ++LQ
Sbjct: 223 EAQKPLDLPIRDKRIQLQ 240
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.139 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,158,081
Number of extensions: 152027
Number of successful extensions: 288
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 284
Number of HSP's successfully gapped: 5
Length of query: 206
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 112
Effective length of database: 8,529,465
Effective search space: 955300080
Effective search space used: 955300080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 109 (46.6 bits)