Os03g0754500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phytochelatin synthetase-like protein 2.
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Os03g0754500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phytochelatin synthetase-like protein 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 382.19 | 0.919 | 5.32 | -0.995 | 0.559 | 2.04 | 1.93 | -0.627 | 0.69 | 0.521 | 29.7 | 3311 | -- | -- |
| 381.94 | 0.91 | 5.31 | -1.11 | 0.59 | 2.04 | 1.93 | -- | 0.785 | 0.36 | 29.3 | 3480 | -- | -- |
| 397.65 | 0.929 | 5.32 | -0.99 | 0.552 | 2.06 | -- | -1.11 | 0.696 | 23.9 | 29.7 | 3310 | -- | -- |
| 397.31 | 0.928 | 5.32 | -1.18 | 0.579 | 2.01 | -- | -- | 0.784 | 23.8 | 29.33 | 3438 | -- | -- |
| 416.9 | 0.951 | 5.33 | -1.03 | -- | 1.95 | -- | -0.899 | 0.686 | -- | 29.7 | 3289 | -- | -- |
| 500.54 | 1.05 | 5.31 | -1.62 | 0.402 | -- | 1.74 | -- | 0.775 | 0.598 | -- | -- | -- | -- |
| 513.09 | 1.06 | 5.32 | -1.69 | 0.404 | -- | -- | -- | 0.768 | 23.8 | -- | -- | -- | -- |
| 411.93 | 0.945 | 5.32 | -1.19 | -- | 1.71 | -- | -- | 0.708 | -- | 29.5 | 4764 | -- | -- |
| 431 | 0.967 | 5.27 | -- | 0.601 | 2.25 | -- | -- | 0.999 | 23.6 | 28.93 | 3461 | -- | -- |
| 523.34 | 1.07 | 5.31 | -1.67 | -- | -- | -- | -- | 0.773 | -- | -- | -- | -- | -- |
| 588.05 | 1.13 | 5.28 | -- | 0.384 | -- | -- | -- | 0.956 | 23.6 | -- | -- | -- | -- |
| 445.2 | 0.983 | 5.25 | -- | -- | 2.07 | -- | -- | 1.03 | -- | 28.25 | 4387 | -- | -- |
| 597.3 | 1.14 | 5.27 | -- | -- | -- | -- | -- | 0.959 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 376.94 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 2 | 377.87 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 3 | 377.92 | radiation | 20 | 4320 | > th | dose independent | rect. | 16 | 16 |
| 5 | 378.24 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 12 |
| 6 | 378.26 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 12 |
| 8 | 378.60 | temperature | 25 | 4320 | > th | dose independent | rect. | 6 | 2 |
| 9 | 378.63 | temperature | 25 | 4320 | > th | dose dependent | rect. | 19 | 15 |
| 16 | 379.29 | temperature | 25 | 4320 | < th | dose independent | rect. | 6 | 2 |
| 17 | 379.32 | temperature | 25 | 4320 | < th | dose independent | rect. | 3 | 6 |
| 34 | 380.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 11 |
| 50 | 380.59 | temperature | 25 | 4320 | > th | dose dependent | sin | 10 | NA |
| 56 | 380.78 | temperature | 25 | 4320 | > th | dose independent | rect. | 1 | 8 |
| 114 | 382.60 | temperature | 25 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 116 | 382.66 | temperature | 25 | 4320 | > th | dose dependent | rect. | 3 | 6 |
| 125 | 382.75 | temperature | 25 | 4320 | > th | dose independent | sin | 9 | NA |
| 143 | 383.19 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 8 |
| 169 | 383.73 | temperature | 25 | 4320 | < th | dose independent | sin | 9 | NA |
| 179 | 383.88 | temperature | 25 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 194 | 384.01 | radiation | 30 | 4320 | > th | dose independent | rect. | 15 | 18 |
| 195 | 384.03 | temperature | 25 | 4320 | > th | dose dependent | rect. | 18 | 3 |
| 206 | 384.23 | temperature | 30 | 4320 | < th | dose independent | rect. | 23 | 17 |
| 212 | 384.25 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 10 |
| 217 | 384.27 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 12 |
| 285 | 385.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 16 |
| 286 | 385.17 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 18 |
| 287 | 385.18 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 329 | 385.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 18 |
| 330 | 385.47 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 20 |
| 331 | 385.48 | temperature | 30 | 4320 | < th | dose independent | rect. | 11 | 16 |
| 417 | 386.04 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 419 | 386.04 | temperature | 25 | 4320 | > th | dose dependent | rect. | 6 | 23 |
| 455 | 386.15 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 516 | 386.36 | temperature | 30 | 4320 | < th | dose independent | sin | 22 | NA |
| 734 | 387.15 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 750 | 387.26 | temperature | 30 | 4320 | > th | dose independent | sin | 21 | NA |
| 784 | 387.52 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 21 |
| 791 | 387.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 6 | 19 |
| 799 | 387.53 | temperature | 30 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 803 | 387.54 | temperature | 30 | 4320 | < th | dose independent | no | NA | NA |
| 822 | 387.54 | temperature | 30 | 4320 | < th | dose independent | rect. | 2 | 23 |
| 978 | 388.13 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 23 |