Os03g0753100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Transcription factor, MADS-box domain containing protein.
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Os03g0753100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Transcription factor, MADS-box domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 532.53 | 1.08 | 6.95 | 7.13 | 2.1 | -2.52 | -1.74 | 1.11 | -2.59 | 7.76 | 22.27 | 23038 | 23.7 | -- |
| 533.53 | 1.08 | 6.95 | 7.3 | 2.13 | -2.52 | -1.7 | -- | -2.58 | 7.78 | 23.31 | 23026 | 1.24 | -- |
| 540.15 | 1.08 | 6.93 | 7.2 | 2.11 | -2.52 | -- | 0.968 | -2.55 | 7.69 | 24.09 | 23047 | 1.09 | -- |
| 541.88 | 1.08 | 6.93 | 7.3 | 2.11 | -2.51 | -- | -- | -2.51 | 7.68 | 23.32 | 23053 | 1.53 | -- |
| 777.55 | 1.3 | 6.92 | 7.28 | -- | -2.53 | -- | 1.35 | -2.52 | -- | 26.84 | 22974 | 0.71 | -- |
| 739.76 | 1.28 | 6.73 | 7.17 | 2.09 | -- | -1.69 | -- | -1.6 | 7.65 | -- | -- | -- | -- |
| 747.77 | 1.28 | 6.73 | 7.13 | 2.09 | -- | -- | -- | -1.6 | 7.6 | -- | -- | -- | -- |
| 607.17 | 1.15 | 6.75 | 8.63 | -- | -3.68 | -- | -- | -2.05 | -- | 452.7 | 24175 | 19.8 | -- |
| 1858.01 | 2.01 | 7.03 | -- | 2.47 | -2.93 | -- | -- | -2.75 | 6.79 | 42.72 | 1480 | 1.92 | -- |
| 982.08 | 1.46 | 6.78 | 7.16 | -- | -- | -- | -- | -1.57 | -- | -- | -- | -- | -- |
| 2088.09 | 2.14 | 6.91 | -- | 2.15 | -- | -- | -- | -2.4 | 7.37 | -- | -- | -- | -- |
| 1866.33 | 2.01 | 6.96 | -- | -- | -4.13 | -- | -- | -2.48 | -- | 234.8 | 1365 | 21.3 | -- |
| 2334.68 | 2.26 | 6.96 | -- | -- | -- | -- | -- | -2.36 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 492.73 | radiation | 10 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 3 | 496.99 | radiation | 10 | 43200 | > th | dose independent | rect. | 8 | 6 |
| 14 | 501.87 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 17 | 503.12 | radiation | 10 | 43200 | > th | dose independent | rect. | 17 | 22 |
| 32 | 503.61 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 37 | 504.56 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 53 | 505.56 | radiation | 10 | 43200 | > th | dose independent | sin | 2 | NA |
| 76 | 509.11 | radiation | 10 | 43200 | > th | dose independent | rect. | 12 | 2 |
| 135 | 510.72 | radiation | 10 | 43200 | > th | dose independent | no | NA | NA |
| 215 | 511.73 | radiation | 10 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 216 | 512.33 | radiation | 10 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 241 | 513.99 | radiation | 10 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 299 | 523.65 | humidity | 80 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 310 | 528.10 | humidity | 70 | 43200 | > th | dose independent | rect. | 9 | 6 |
| 312 | 528.47 | wind | 1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 315 | 528.73 | wind | 1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 326 | 531.63 | humidity | 70 | 43200 | < th | dose independent | rect. | 10 | 5 |
| 343 | 532.06 | humidity | 80 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 344 | 532.17 | radiation | 10 | 43200 | < th | dose dependent | rect. | 8 | 6 |
| 347 | 532.32 | radiation | 10 | 43200 | < th | dose dependent | rect. | 8 | 8 |
| 355 | 533.31 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 373 | 536.56 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 404 | 538.39 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 405 | 538.42 | wind | 1 | 43200 | < th | dose dependent | rect. | 16 | 6 |
| 408 | 538.83 | temperature | 30 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 410 | 538.90 | wind | 1 | 43200 | < th | dose dependent | rect. | 10 | 15 |
| 422 | 540.14 | temperature | 30 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 437 | 541.23 | temperature | 30 | 43200 | > th | dose dependent | rect. | 18 | 16 |
| 441 | 541.51 | temperature | 30 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 471 | 541.95 | temperature | 30 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 555 | 545.16 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 557 | 545.22 | wind | 1 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 563 | 545.49 | wind | 1 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 565 | 545.52 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 609 | 546.83 | wind | 1 | 43200 | < th | dose dependent | rect. | 14 | 9 |
| 612 | 546.87 | radiation | 20 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 613 | 546.89 | humidity | 70 | 43200 | > th | dose independent | sin | 0 | NA |
| 614 | 546.93 | wind | 1 | 43200 | < th | dose dependent | sin | 18 | NA |
| 710 | 548.79 | wind | 1 | 43200 | > th | dose independent | rect. | 16 | 10 |
| 719 | 549.09 | humidity | 70 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 727 | 549.29 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 801 | 550.60 | humidity | 80 | 43200 | > th | dose independent | rect. | 7 | 3 |
| 815 | 550.89 | temperature | 30 | 43200 | > th | dose dependent | sin | 9 | NA |
| 834 | 551.50 | wind | 5 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 839 | 551.61 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 846 | 551.77 | wind | 5 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 857 | 552.09 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 2 |
| 863 | 552.23 | humidity | 70 | 43200 | < th | dose independent | rect. | 9 | 15 |
| 887 | 552.69 | humidity | 70 | 43200 | < th | dose independent | sin | 0 | NA |
| 924 | 553.09 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 940 | 553.41 | temperature | 15 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 956 | 553.73 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 967 | 553.97 | humidity | 60 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 973 | 554.07 | radiation | 20 | 43200 | < th | dose independent | rect. | 13 | 1 |