FiT-DB / Search/ Help/ Sample detail

Os03g0750800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcriptional adaptor (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.9 (0.0098) R2 : 0.0934
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.141 (0.0206) R2dN8 : 0.121 R2N8 : 0.0934
σ : 0.184
deviance : 15.62
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = precipitation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
6.45 0.119 11.9 0.36 0.251 1.14 -0.124 -2.58 0.196 8.38 0.4296 412 -- --
6.77 0.121 11.9 0.405 0.289 0.463 -0.109 -- 0.228 7.99 0.871 367 -- --
6.49 0.119 11.9 0.364 0.25 1.1 -- -2.33 0.196 8.41 0.3898 412 -- --
6.56 0.119 11.9 0.402 0.257 0.527 -- -- 0.205 8.34 0.4683 419 -- --
9.84 0.146 11.9 0.373 -- 0.972 -- -2.23 0.199 -- -0.05024 407 -- --
7.44 0.128 11.9 0.442 0.232 -- -0.23 -- 0.187 8.25 -- -- -- --
7.6 0.129 11.9 0.435 0.232 -- -- -- 0.187 8.34 -- -- -- --
9.81 0.146 11.9 0.385 -- 0.336 -- -- 0.187 -- 0.6597 899 -- --
10.45 0.151 11.9 -- 0.247 0.462 -- -- 0.159 8.47 0.8317 844 -- --
10.6 0.152 11.9 0.437 -- -- -- -- 0.19 -- -- -- -- --
12.59 0.166 11.9 -- 0.234 -- -- -- 0.139 8.2 -- -- -- --
12.87 0.167 11.9 -- -- 0.325 -- -- 0.183 -- 1.001 13857 -- --
15.62 0.184 11.9 -- -- -- -- -- 0.141 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 6.32 wind 1e+00 14400 > th dose independent rect. 24 1
2 6.34 wind 1e+00 43200 < th dose independent rect. 12 1
3 6.34 wind 1e+00 14400 < th dose independent rect. 24 1
6 6.37 wind 1e+00 14400 < th dose independent rect. 24 3
7 6.37 wind 1e+00 14400 < th dose dependent rect. 1 3
8 6.38 humidity 9e+01 14400 > th dose independent rect. 24 1
10 6.38 humidity 9e+01 14400 > th dose dependent rect. 2 4
11 6.39 humidity 9e+01 14400 < th dose independent rect. 24 1
12 6.39 wind 1e+00 43200 < th dose dependent rect. 12 2
14 6.40 atmosphere 1e+03 14400 < th dose independent rect. 20 1
15 6.40 precipitation 1e-01 43200 > th dose independent rect. 23 1
18 6.40 wind 1e+00 14400 < th dose independent rect. 22 3
19 6.40 humidity 9e+01 14400 < th dose independent rect. 23 5
22 6.40 precipitation 1e-01 43200 > th dose dependent rect. 23 1
24 6.41 atmosphere 1e+03 14400 > th dose independent rect. 19 1
26 6.41 precipitation 1e-01 43200 < th dose independent rect. 23 1
35 6.41 precipitation 1e-01 720 < th dose independent rect. 13 15
36 6.41 precipitation 1e-01 43200 < th dose dependent rect. 23 1
37 6.41 wind 1e+00 43200 < th dose dependent rect. 5 2
38 6.41 precipitation 1e-01 720 < th dose dependent rect. 13 15
39 6.42 wind 7e+00 43200 < th dose independent rect. 18 1
89 6.43 wind 5e+00 14400 > th dose dependent rect. 18 1
92 6.43 precipitation 1e-01 14400 > th dose dependent rect. 8 10
95 6.43 precipitation 1e-01 720 > th dose dependent rect. 5 14
97 6.44 wind 7e+00 43200 > th dose independent rect. 18 1
98 6.44 precipitation 1e-01 43200 > th dose independent rect. 17 1
99 6.44 precipitation 1e-01 43200 < th dose independent rect. 17 1
100 6.44 wind 1e+00 43200 > th dose independent rect. 12 2
125 6.44 humidity 9e+01 14400 > th dose dependent rect. 2 1
126 6.44 atmosphere 1e+03 14400 < th dose dependent rect. 23 1
127 6.44 precipitation 1e-01 43200 < th dose dependent rect. 17 1
130 6.44 precipitation 1e-01 720 > th dose dependent rect. 7 12
132 6.45 atmosphere 1e+03 14400 < th dose independent rect. 3 1
141 6.45 humidity 9e+01 14400 > th dose independent rect. 23 6
144 6.45 atmosphere 1e+03 14400 > th dose independent rect. 16 7
165 6.45 wind 1e+00 14400 < th dose dependent rect. 22 1
167 6.45 wind 1e+00 43200 < th dose dependent rect. 5 4
168 6.45 precipitation 1e-01 720 > th dose dependent rect. 13 6
187 6.46 precipitation 1e-01 720 > th dose independent rect. 13 6
204 6.46 precipitation 1e-01 720 > th dose independent rect. 7 12
207 6.46 precipitation 1e-01 720 > th dose independent rect. 5 14
213 6.46 precipitation 1e-01 43200 > th dose dependent rect. 1 2
219 6.47 atmosphere 1e+03 14400 > th dose independent sin 13 NA
223 6.47 atmosphere 1e+03 14400 < th dose independent sin 13 NA
232 6.47 humidity 9e+01 14400 > th dose independent rect. 24 3
234 6.47 humidity 6e+01 43200 > th dose independent rect. 5 4
256 6.47 precipitation 1e-01 720 < th dose independent rect. 16 9
277 6.47 precipitation 1e-01 720 > th dose dependent sin 23 NA
286 6.47 precipitation 1e-01 720 < th dose dependent rect. 16 9
287 6.47 humidity 5e+01 270 > th dose dependent rect. 17 13
289 6.47 precipitation 1e-01 720 > th dose dependent rect. 13 14
296 6.48 wind 1e+00 43200 < th dose independent rect. 8 1
297 6.48 atmosphere 1e+03 14400 > th dose independent rect. 1 1
298 6.48 atmosphere 1e+03 14400 > th dose independent rect. 3 1
302 6.48 humidity 8e+01 720 < th dose independent rect. 16 2
306 6.48 precipitation 1e-01 43200 > th dose independent rect. 1 2
307 6.48 precipitation 1e-01 43200 < th dose independent rect. 1 2
319 6.48 wind 1e+00 43200 < th dose independent rect. 12 5
322 6.48 humidity 7e+01 43200 < th dose independent rect. 24 8
371 6.48 radiation 2e+01 43200 > th dose independent rect. 16 15
386 6.48 precipitation 1e-01 720 > th dose dependent sin 21 NA
389 6.48 humidity 8e+01 1440 > th dose dependent rect. 11 1
390 6.48 humidity 7e+01 43200 < th dose dependent rect. 7 1
393 6.48 precipitation 1e-01 43200 < th dose dependent rect. 1 2
401 6.48 wind 1e+00 14400 < th dose dependent rect. 23 7
426 6.49 atmosphere 1e+03 14400 > th dose independent rect. 15 2
446 6.49 wind 1e+00 43200 < th dose independent rect. 22 11
511 6.49 precipitation 1e-01 720 > th dose dependent sin 17 NA
518 6.49 humidity 7e+01 43200 < th dose dependent rect. 5 3
561 6.50 atmosphere 1e+03 14400 < th dose independent rect. 16 1
569 6.50 wind 1e+00 43200 > th dose independent rect. 12 5
581 6.50 wind 1e+00 14400 < th dose independent rect. 23 8
682 6.50 precipitation 1e-01 43200 > th dose dependent rect. 17 1
732 6.51 atmosphere 1e+03 14400 > th dose independent no NA NA
738 6.51 radiation 2e+01 43200 > th dose independent rect. 16 1
739 6.51 precipitation 1e-01 43200 > th dose independent rect. 4 1
741 6.51 wind 1e+00 43200 > th dose independent rect. 5 2
856 6.51 atmosphere 1e+03 14400 > th dose independent rect. 18 23
890 6.51 wind 1e+00 43200 < th dose dependent rect. 22 11
895 6.51 precipitation 1e-01 720 > th dose dependent rect. 15 12
917 6.52 atmosphere 1e+03 14400 < th dose independent no NA NA
920 6.52 wind 5e+00 14400 > th dose independent rect. 17 3
921 6.52 humidity 8e+01 43200 < th dose independent rect. 17 3
924 6.52 wind 1e+00 43200 > th dose independent rect. 5 4
932 6.52 humidity 6e+01 43200 < th dose independent rect. 5 5
936 6.52 precipitation 1e-01 43200 > th dose independent rect. 24 5
995 6.52 atmosphere 1e+03 14400 > th dose independent rect. 2 21