BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0750800 Os03g0750800|AK072597
(567 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G16420.1 | chr4:9262805-9265775 REVERSE LENGTH=488 536 e-152
AT3G07740.4 | chr3:2470014-2473062 REVERSE LENGTH=556 469 e-132
AT4G34430.4 | chr4:16461069-16464993 FORWARD LENGTH=987 69 6e-12
AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808 69 8e-12
>AT4G16420.1 | chr4:9262805-9265775 REVERSE LENGTH=488
Length = 487
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 284/557 (50%), Positives = 362/557 (64%), Gaps = 75/557 (13%)
Query: 1 MGRSRGVPNSGDDETNHRSKRRRVASSGDAPDSLSXXXXXXXXXXXXXXLYHCNYCNKDI 60
MGRSRG + +D T R+++++ A++ + +S S Y+C+YC KDI
Sbjct: 1 MGRSRGNFQNFEDPT-QRTRKKKNAANVENFESTSLVPGAEGGGK-----YNCDYCQKDI 54
Query: 61 SGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPDWNADEEILLL 120
+GKIRIKC+ CPDFDLC+EC SVGAE+TPH+ +HPYRVM NL+FPLICPDW+AD+E+LLL
Sbjct: 55 TGKIRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFPLICPDWSADDEMLLL 114
Query: 121 EGIEMYGLGNWAEVAEHVGTKTKAQCIDHYTTAYMNSPCYPLPDMSHVNGKNRKELLAMA 180
EG+E+YGLGNWAEVAEHVGTK+K QC++HY Y+NSP +PLPDMSHV GKNRKEL AMA
Sbjct: 115 EGLEIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFFPLPDMSHVAGKNRKELQAMA 174
Query: 181 KVQGESKKVLPGDLTPKDESPFSPPRVKVEDALGEGLAGRSPSHIAGGANKKASNVGQFK 240
K + + KK + K+E PFSPP+VKVED E
Sbjct: 175 KGRIDDKK---AEQNMKEEYPFSPPKVKVEDTQKESF----------------------- 208
Query: 241 DGANVAKVEDGHVDRSIGVKKPRYSADEGPSLTELSGYNSKRHEFDPEYDNDAEQALAEM 300
VDRS G KKP S SL ELS YN KR EFDPEYDNDAEQ LAEM
Sbjct: 209 ------------VDRSFGGKKP-VSTSVNNSLVELSNYNQKREEFDPEYDNDAEQLLAEM 255
Query: 301 EFKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKDLTNEDKEVYHR 360
EFKE D+ + ELKLRVLRIY RLDERKRRKEFI+ERNLL+PNP EKDL+ E+K R
Sbjct: 256 EFKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIERNLLYPNPFEKDLSQEEKVQCRR 315
Query: 361 YKVFMRFLSKEEHEALVRSVLEERKIRRRIQELQECRSAGCRTLAEAKIHIEQKRKKEHE 420
VFMRF SKEEH+ L+R+V+ E ++ +R+++L+E + AGCR+ AEA+ ++ +KRK+E+E
Sbjct: 316 LDVFMRFHSKEEHDELLRNVVSEYRMVKRLKDLKEAQVAGCRSTAEAERYLGRKRKRENE 375
Query: 421 VNAQKAKESGQLLSNTKVVHKTNRPMKIESDGNLDQKKGGASLDSTGRDSPKTTGHAGTK 480
+ KESGQ G G P A +
Sbjct: 376 EGMNRGKESGQF---------------------------GQIAGEMGSRPPV---QASSS 405
Query: 481 HWDDWDIVGFPGAELLSTSEKNLCCQNRLLPNHYLKMQEVLMQEIFKGSVAKKEDAHVLF 540
+ +D D++GF ++LLS SEK LC + +L+P YL+MQ+V+ EIFKG+V KK DA+ LF
Sbjct: 406 YVNDLDLIGFTESQLLSESEKRLCSEVKLVPPVYLQMQQVMSHEIFKGNVTKKSDAYSLF 465
Query: 541 KVDPAKVDNVYDMVTKK 557
K+DP KVD VYDM+ KK
Sbjct: 466 KIDPTKVDRVYDMLVKK 482
>AT3G07740.4 | chr3:2470014-2473062 REVERSE LENGTH=556
Length = 555
Score = 469 bits (1208), Expect = e-132, Method: Compositional matrix adjust.
Identities = 268/569 (47%), Positives = 353/569 (62%), Gaps = 32/569 (5%)
Query: 1 MGRSRGVPNSGDDETNHRSKRRRVASSGDAPDSLSXXXXXXXXXXXXXXLYHCNYCNKDI 60
MGRS+ +++ N +R+ S G + S LY CNYC+KD+
Sbjct: 1 MGRSKLASRPAEEDLNPGKSKRKKISLGPENAAASISTGIEAGNERKPGLYCCNYCDKDL 60
Query: 61 SGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVM-------DNLSFPLICPDWNA 113
SG +R KC+ C DFDLCVECFSVG E+ H+++HPYRVM DNLSF L+ DWNA
Sbjct: 61 SGLVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMVSFQRRADNLSFSLVTSDWNA 120
Query: 114 DEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDHYTTAYMNSPCYPLPDMSHVNGKNR 173
DEEILLLE I YG GNW EVA+HVG+KT +CI H+ +AYM SPC+PLPD+SH GK++
Sbjct: 121 DEEILLLEAIATYGFGNWKEVADHVGSKTTTECIKHFNSAYMQSPCFPLPDLSHTIGKSK 180
Query: 174 KELLAMAKVQGESKKVLPG--DLTPKDESPFSPPRVKVEDALGEGLAGRSPSHIAGGANK 231
ELLAM+K K +P L+PK+E P S +++ + P A K
Sbjct: 181 DELLAMSK-DSAVKTEIPAFVRLSPKEELPVS---AEIKHEASGKVNEIDPPLSALAGVK 236
Query: 232 KASNVGQFKDGANVAKVEDG--HVDRSIGVKKPRYSADEGPSLTELSGYNSKRHEFDPEY 289
K NV Q KD + K+E DRS+G KK R ++ P +TEL GYN KR EF+ E+
Sbjct: 237 KKGNVPQAKD---IIKLEAAKQQSDRSVGEKKLRLPGEKVPLVTELYGYNLKREEFEIEH 293
Query: 290 DNDAEQALAEMEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKD 349
DNDAEQ LA+MEFK++D++ +RE KL+VLRIY RLDERKRRKEF+LERNLL+P+ E
Sbjct: 294 DNDAEQLLADMEFKDSDTDAEREQKLQVLRIYSKRLDERKRRKEFVLERNLLYPDQYEMS 353
Query: 350 LTNEDKEVYHRYKVFMRFLSKEEHEALVRSVLEERKIRRRIQELQECRSAGCRTLAEAKI 409
L+ E++++Y KVF RF SKEEH+ L++ V+EE +I RRI++LQE R+AGCRT ++A
Sbjct: 354 LSAEERKIYKSCKVFARFQSKEEHKELIKKVIEEHQILRRIEDLQEARTAGCRTTSDANR 413
Query: 410 HIEQKRKKEHEVNAQKAKESGQLLSNTKVVHKTNRPMKIESDGNLDQKKGGASLDSTGRD 469
IE+KRKKE E + G S K+ R + +L G D
Sbjct: 414 FIEEKRKKEAEESMLLRLNHGAPGSIAGKTLKSPRGLP-------------RNLHPFGSD 460
Query: 470 S-PKTTGHAGTKHWDDWDIVGFPGAELLSTSEKNLCCQNRLLPNHYLKMQEVLMQEIFKG 528
S PK T D WD+ G GA+LLS +EK +C + R+LP HYLKM ++L +EI KG
Sbjct: 461 SLPKVTPPRIYSGLDTWDVDGLLGADLLSETEKKMCNETRILPVHYLKMLDILTREIKKG 520
Query: 529 SVAKKEDAHVLFKVDPAKVDNVYDMVTKK 557
+ KK DA+ FKV+P+KVD VYDM+ K
Sbjct: 521 QIKKKSDAYSFFKVEPSKVDRVYDMLVHK 549
>AT4G34430.4 | chr4:16461069-16464993 FORWARD LENGTH=987
Length = 986
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 51 YHCNYCNKDISGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPD 110
YHCN C+ D S K R C K DFDLC ECF+ G + S+ +M+ P +
Sbjct: 308 YHCNSCSADCSRK-RYHCPKQADFDLCTECFNSGKFSSDMSSSDFI-LMEPAEAPGVGSG 365
Query: 111 WNADEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDHY 150
D+E LLL NW E+AEHV TKTKAQC+ H+
Sbjct: 366 KWTDQETLLLLEALEIFKENWNEIAEHVATKTKAQCMLHF 405
>AT1G21700.1 | chr1:7620156-7623978 REVERSE LENGTH=808
Length = 807
Score = 68.9 bits (167), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 5/101 (4%)
Query: 52 HCNYCNKDISGKIRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSF--PLICP 109
HCN+C++ + + + K D LC +CF G V H RV D + F
Sbjct: 344 HCNHCSRPLP-TVYFQSQKKGDILLCCDCFHHGRFVVGHSCLDFVRV-DPMKFYGDQDGD 401
Query: 110 DWNADEEILLLEGIEMYGLGNWAEVAEHVGTKTKAQCIDHY 150
+W E +LLLE +E+Y NW ++A+HVG+K+KAQCI H+
Sbjct: 402 NWTDQETLLLLEAVELYN-ENWVQIADHVGSKSKAQCILHF 441
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,126,694
Number of extensions: 588367
Number of successful extensions: 1697
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1692
Number of HSP's successfully gapped: 5
Length of query: 567
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 463
Effective length of database: 8,255,305
Effective search space: 3822206215
Effective search space used: 3822206215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)