Os03g0747700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0747700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 185.25 | 0.639 | 11.2 | -0.698 | 1.18 | -0.724 | -1.3 | -2.85 | -1.23 | 20.3 | 0.08803 | 16653 | -- | -- |
| 189.07 | 0.64 | 11.2 | -0.45 | 1.18 | -1.23 | -1.1 | -- | -1.22 | 20.3 | 0.9145 | 21529 | -- | -- |
| 190.38 | 0.643 | 11.2 | -0.661 | 1.18 | -0.709 | -- | -2.84 | -1.23 | 20.4 | 0.1076 | 16634 | -- | -- |
| 192.49 | 0.646 | 11.2 | -0.316 | 1.21 | -1.28 | -- | -- | -1.28 | 20.5 | 0.9086 | 21799 | -- | -- |
| 267.59 | 0.762 | 11.2 | -0.595 | -- | -0.692 | -- | -3.19 | -1.2 | -- | 0.0417 | 16657 | -- | -- |
| 228.06 | 0.708 | 11.1 | -1.04 | 1.19 | -- | -1.2 | -- | -1.12 | 20.4 | -- | -- | -- | -- |
| 232.49 | 0.714 | 11.1 | -1 | 1.19 | -- | -- | -- | -1.12 | 20.5 | -- | -- | -- | -- |
| 271.24 | 0.767 | 11.1 | -0.163 | -- | -1.34 | -- | -- | -1.27 | -- | 0.9445 | 27760 | -- | -- |
| 192.24 | 0.646 | 11.2 | -- | 1.21 | -1.42 | -- | -- | -1.24 | 20.3 | 0.9503 | 28016 | -- | -- |
| 311.19 | 0.824 | 11.1 | -1.01 | -- | -- | -- | -- | -1.13 | -- | -- | -- | -- | -- |
| 259.1 | 0.753 | 11.1 | -- | 1.19 | -- | -- | -- | -1.01 | 20.4 | -- | -- | -- | -- |
| 271.72 | 0.768 | 11.1 | -- | -- | -1.42 | -- | -- | -1.26 | -- | 0.9324 | 27760 | -- | -- |
| 338.11 | 0.858 | 11.1 | -- | -- | -- | -- | -- | -1.02 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 182.92 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 5 | 1 |
| 2 | 183.92 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 5 | 2 |
| 6 | 186.21 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 21 |
| 8 | 186.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 20 |
| 10 | 186.34 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 11 | 186.38 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 22 |
| 12 | 186.40 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 20 |
| 13 | 186.40 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 20 |
| 14 | 186.42 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 27 | 186.64 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 22 |
| 30 | 186.66 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 23 |
| 32 | 186.67 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 40 | 186.70 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 2 | 16 |
| 43 | 186.72 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 48 | 186.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 23 |
| 60 | 186.80 | temperature | 25.0 | 90 | > th | dose independent | rect. | 5 | 2 |
| 79 | 186.87 | radiation | 10.0 | 30 | < th | dose independent | rect. | 6 | 1 |
| 83 | 186.89 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 86 | 186.91 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 22 | 9 |
| 107 | 186.99 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 19 | NA |
| 110 | 186.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 19 |
| 128 | 187.05 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 19 | NA |
| 129 | 187.05 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 19 | NA |
| 140 | 187.09 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 202 | 187.29 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 12 | 12 |
| 212 | 187.34 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 9 |
| 221 | 187.37 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 11 |
| 223 | 187.37 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 11 |
| 235 | 187.40 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 1 | 6 |
| 238 | 187.41 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 9 |
| 242 | 187.41 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 9 |
| 342 | 187.67 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 15 | NA |
| 369 | 187.75 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 8 |
| 381 | 187.76 | atmosphere | 1010.0 | 30 | < th | dose dependent | rect. | 6 | 1 |
| 389 | 187.78 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 8 |
| 391 | 187.78 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 8 |
| 411 | 187.84 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 5 | 1 |
| 469 | 187.96 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 6 |
| 478 | 187.98 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 3 | 15 |
| 480 | 187.98 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 3 | 15 |
| 482 | 187.99 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 6 |
| 485 | 187.99 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 6 |
| 489 | 188.01 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 5 |
| 491 | 188.01 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 3 | 15 |
| 494 | 188.01 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 5 |
| 510 | 188.08 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 5 |
| 537 | 188.15 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 23 |
| 540 | 188.15 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 23 |
| 541 | 188.16 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 23 |
| 551 | 188.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 14 |
| 567 | 188.27 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 19 |
| 573 | 188.27 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 19 |
| 576 | 188.28 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 19 |
| 595 | 188.32 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 21 |
| 596 | 188.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 21 |
| 598 | 188.32 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 23 |
| 601 | 188.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 21 |
| 603 | 188.32 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 23 |
| 607 | 188.33 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 23 |
| 639 | 188.44 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 12 | 8 |
| 694 | 188.53 | precipitation | 0.1 | 14400 | > th | dose independent | no | NA | NA |
| 695 | 188.53 | precipitation | 0.1 | 14400 | < th | dose independent | no | NA | NA |
| 697 | 188.53 | precipitation | 0.1 | 14400 | < th | dose dependent | no | NA | NA |
| 736 | 188.60 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 23 |
| 747 | 188.63 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 11 |
| 772 | 188.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 9 |
| 776 | 188.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 9 |
| 779 | 188.67 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 9 |
| 832 | 188.76 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 11 |
| 839 | 188.76 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 11 |