BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0747700 Os03g0747700|AK058795
         (212 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G05385.1  | chr1:1582747-1583648 REVERSE LENGTH=200            162   8e-41

>AT1G05385.1 | chr1:1582747-1583648 REVERSE LENGTH=200
          Length = 199

 Score =  162 bits (411), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 82/119 (68%), Positives = 97/119 (81%), Gaps = 1/119 (0%)

Query: 94  IKSIFDPNERTKSGKVLPKAYLKAAREVVRTLRESLGEDDGGDVAKFRRGADAAKESIRE 153
            K++FDPNERTKSGK LPKAYLK+AREVV+T+RESL E+   D AKFRR ADAAKESIR+
Sbjct: 82  FKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPK-DNAKFRRSADAAKESIRD 140

Query: 154 FLGGWRGQQAVAAEESYVALEKAIRSLAEFYSKAGPFASLPKDVKDKILANLNTADAFL 212
           +L  WRGQ+ VA EESYV LE  IR+LA+FYSKAGP A LP +VK +IL +LN A+ FL
Sbjct: 141 YLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDLNKAEEFL 199



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.316    0.131    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,168,373
Number of extensions: 97395
Number of successful extensions: 360
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 359
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 118
Effective length of database: 8,529,465
Effective search space: 1006476870
Effective search space used: 1006476870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)