Os03g0741700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os03g0741700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 56.53 | 0.353 | 7.91 | 1.75 | 0.987 | -1.4 | 0.035 | -0.849 | 0.429 | 16.9 | 23.91 | 843 | -- | -- |
| 57.51 | 0.353 | 7.91 | 1.65 | 0.984 | -1.27 | -0.0127 | -- | 0.421 | 16.9 | 24.04 | 825 | -- | -- |
| 56.47 | 0.35 | 7.9 | 1.74 | 0.999 | -1.45 | -- | -0.89 | 0.433 | 16.9 | 23.59 | 855 | -- | -- |
| 57.46 | 0.353 | 7.92 | 1.62 | 0.983 | -1.28 | -- | -- | 0.403 | 16.9 | 24.06 | 825 | -- | -- |
| 77.73 | 0.411 | 7.93 | 1.52 | -- | -1.77 | -- | 0.116 | 0.315 | -- | 31.12 | 263 | -- | -- |
| 80.56 | 0.421 | 7.87 | 1.98 | 0.995 | -- | -0.0278 | -- | 0.648 | 17.5 | -- | -- | -- | -- |
| 80.56 | 0.42 | 7.87 | 1.98 | 0.995 | -- | -- | -- | 0.648 | 17.5 | -- | -- | -- | -- |
| 77.74 | 0.411 | 7.93 | 1.54 | -- | -1.76 | -- | -- | 0.319 | -- | 31.05 | 263 | -- | -- |
| 68.54 | 0.386 | 8.01 | -- | 1.01 | -1.78 | -- | -- | 0.0108 | 17.4 | 21.76 | 47520 | -- | -- |
| 132.06 | 0.537 | 7.86 | 1.94 | -- | -- | -- | -- | 0.624 | -- | -- | -- | -- | -- |
| 183.42 | 0.634 | 7.92 | -- | 0.963 | -- | -- | -- | 0.428 | 17.6 | -- | -- | -- | -- |
| 121.12 | 0.513 | 8 | -- | -- | -1.75 | -- | -- | 0.00416 | -- | 21.53 | 47520 | -- | -- |
| 231.62 | 0.71 | 7.91 | -- | -- | -- | -- | -- | 0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.33 | temperature | 10 | 90 | > th | dose dependent | sin | 4 | NA |
| 5 | 47.94 | temperature | 30 | 90 | < th | dose dependent | sin | 4 | NA |
| 24 | 49.27 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 14 |
| 227 | 54.34 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 250 | 54.62 | temperature | 30 | 10 | < th | dose dependent | rect. | 2 | 12 |
| 256 | 54.65 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 8 |
| 274 | 54.84 | temperature | 15 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 444 | 55.99 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 13 |
| 466 | 56.10 | temperature | 20 | 720 | > th | dose independent | rect. | 22 | 18 |
| 481 | 56.16 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 14 |
| 526 | 56.40 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 534 | 56.42 | temperature | 20 | 720 | < th | dose independent | rect. | 22 | 14 |
| 612 | 56.68 | temperature | 25 | 90 | < th | dose independent | sin | 3 | NA |
| 614 | 56.69 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 684 | 56.98 | temperature | 25 | 90 | > th | dose independent | sin | 3 | NA |
| 734 | 57.14 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 22 |
| 763 | 57.25 | temperature | 20 | 4320 | > th | dose independent | rect. | 16 | 12 |
| 796 | 57.34 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 798 | 57.36 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 800 | 57.36 | temperature | 20 | 4320 | > th | dose independent | rect. | 9 | 19 |
| 831 | 57.44 | temperature | 20 | 4320 | < th | dose independent | sin | 17 | NA |
| 838 | 57.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 12 |
| 865 | 57.55 | temperature | 20 | 4320 | < th | dose independent | rect. | 9 | 19 |
| 946 | 57.72 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 963 | 57.76 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 7 |
| 986 | 57.79 | temperature | 20 | 4320 | > th | dose independent | rect. | 1 | 22 |