BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0741700 Os03g0741700|J023142P13
         (75 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G30580.1  | chr2:13026444-13030363 FORWARD LENGTH=421           92   5e-20
AT1G06770.1  | chr1:2079222-2081707 REVERSE LENGTH=422             88   1e-18
AT3G23060.1  | chr3:8200868-8203116 FORWARD LENGTH=481             73   2e-14

>AT2G30580.1 | chr2:13026444-13030363 FORWARD LENGTH=421
          Length = 420

 Score = 92.0 bits (227), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/57 (68%), Positives = 48/57 (84%)

Query: 19 CMTCPLCKGLLREATAITECLHTFCKECIMEKIDDEEVDHCPVCNIDLGCDPEEKLR 75
          CMTCPLC  LLR+AT I+ECLHTFC++CI EKI ++E++ CPVC+IDLG  P EKLR
Sbjct: 17 CMTCPLCDKLLRDATTISECLHTFCRKCIYEKITEDEIESCPVCDIDLGGTPLEKLR 73



>AT1G06770.1 | chr1:2079222-2081707 REVERSE LENGTH=422
          Length = 421

 Score = 87.8 bits (216), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 35/57 (61%), Positives = 47/57 (82%)

Query: 19 CMTCPLCKGLLREATAITECLHTFCKECIMEKIDDEEVDHCPVCNIDLGCDPEEKLR 75
          C++C +C  +LR+AT I+ECLHTFC++CI EKI ++E++ CPVCNIDLG  P EKLR
Sbjct: 13 CLSCSICDNILRDATTISECLHTFCRKCIYEKITEDEIETCPVCNIDLGSTPLEKLR 69



>AT3G23060.1 | chr3:8200868-8203116 FORWARD LENGTH=481
          Length = 480

 Score = 73.2 bits (178), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 41/57 (71%)

Query: 19 CMTCPLCKGLLREATAITECLHTFCKECIMEKIDDEEVDHCPVCNIDLGCDPEEKLR 75
          C+ CP+C    ++AT I+ECLHTFC+ CI  K  +E V+ CPVCN++LG  P EKLR
Sbjct: 13 CLACPICTNPFKDATTISECLHTFCRSCIRNKFINERVNACPVCNVNLGVFPLEKLR 69



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.327    0.142    0.494 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,474,167
Number of extensions: 48294
Number of successful extensions: 398
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 407
Number of HSP's successfully gapped: 3
Length of query: 75
Length of database: 11,106,569
Length adjustment: 47
Effective length of query: 28
Effective length of database: 9,818,017
Effective search space: 274904476
Effective search space used: 274904476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)