Os03g0738100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Armadillo-like helical domain containing protein.
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Os03g0738100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Armadillo-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 164.25 | 0.602 | 4.78 | 2.31 | 0.33 | -1.72 | -0.662 | 8.74 | 0.464 | 4.6 | 25.7 | 1186 | -- | -- |
| 178.94 | 0.623 | 4.96 | 0.49 | 0.415 | -1.22 | -0.611 | -- | 0.227 | 6.14 | -13.58 | 2720 | -- | -- |
| 165.35 | 0.599 | 4.77 | 2.3 | 0.327 | -1.73 | -- | 8.76 | 0.449 | 4.7 | 25.84 | 1184 | -- | -- |
| 174.82 | 0.616 | 4.97 | 0.702 | 0.4 | -1.39 | -- | -- | 0.244 | 6.39 | -2.511 | 8053 | -- | -- |
| 165.51 | 0.599 | 4.78 | 2.29 | -- | -1.74 | -- | 8.77 | 0.506 | -- | 25.36 | 1917 | -- | -- |
| 208.76 | 0.677 | 5.05 | -0.0107 | 0.33 | -- | -0.52 | -- | -0.0835 | 6.84 | -- | -- | -- | -- |
| 209.41 | 0.678 | 5.04 | -0.0187 | 0.328 | -- | -- | -- | -0.0816 | 7.15 | -- | -- | -- | -- |
| 179.04 | 0.623 | 4.96 | 0.75 | -- | -1.49 | -- | -- | 0.339 | -- | -1.331 | 7868 | -- | -- |
| 184.31 | 0.632 | 5 | -- | 0.34 | -1.04 | -- | -- | 0.123 | 6.42 | -4.149 | 6812 | -- | -- |
| 215.11 | 0.685 | 5.05 | -0.0126 | -- | -- | -- | -- | -0.0758 | -- | -- | -- | -- | -- |
| 209.42 | 0.677 | 5.04 | -- | 0.328 | -- | -- | -- | -0.0795 | 7.16 | -- | -- | -- | -- |
| 189.42 | 0.641 | 5.01 | -- | -- | -1.05 | -- | -- | 0.117 | -- | 2.714 | 6397 | -- | -- |
| 215.11 | 0.685 | 5.05 | -- | -- | -- | -- | -- | -0.0744 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 158.61 | wind | 5.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 2 | 158.62 | wind | 5.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 3 | 158.68 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 10 | 6 |
| 4 | 158.69 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 7 | 158.97 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 8 | 159.02 | wind | 5.0 | 43200 | > th | dose independent | rect. | 11 | 4 |
| 13 | 159.17 | wind | 5.0 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 27 | 159.85 | wind | 7.0 | 43200 | < th | dose independent | rect. | 7 | 9 |
| 29 | 159.86 | wind | 7.0 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 31 | 159.91 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 32 | 159.93 | wind | 7.0 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 110 | 160.89 | wind | 7.0 | 43200 | < th | dose independent | sin | 1 | NA |
| 120 | 160.96 | wind | 7.0 | 43200 | > th | dose independent | sin | 1 | NA |
| 158 | 161.27 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 3 |
| 201 | 161.52 | wind | 5.0 | 43200 | > th | dose dependent | sin | 22 | NA |
| 261 | 161.96 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 270 | 162.01 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 20 | 2 |
| 274 | 162.02 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 305 | 162.23 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 317 | 162.26 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 8 |
| 322 | 162.28 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 3 |
| 323 | 162.28 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 5 |
| 328 | 162.29 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 1 |
| 337 | 162.33 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 17 |
| 345 | 162.38 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 350 | 162.41 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 370 | 162.53 | wind | 5.0 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 378 | 162.55 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 18 | 12 |
| 392 | 162.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 393 | 162.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 395 | 162.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 398 | 162.59 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 15 |
| 403 | 162.60 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 460 | 162.67 | radiation | 1.0 | 43200 | < th | dose dependent | sin | 9 | NA |
| 463 | 162.68 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 466 | 162.68 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 467 | 162.69 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 470 | 162.69 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 473 | 162.70 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 8 |
| 484 | 162.72 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 488 | 162.73 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 5 |
| 490 | 162.73 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 3 |
| 492 | 162.74 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 533 | 162.78 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 535 | 162.78 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 550 | 162.79 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 567 | 162.81 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 578 | 162.82 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 7 | 1 |
| 608 | 162.87 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 626 | 162.91 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 3 | 6 |
| 635 | 162.92 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 664 | 162.94 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 15 | 4 |
| 719 | 163.06 | temperature | 20.0 | 43200 | < th | dose independent | rect. | 24 | 8 |
| 725 | 163.07 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 24 | 8 |
| 739 | 163.09 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 775 | 163.13 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 796 | 163.16 | atmosphere | 1010.0 | 43200 | < th | dose independent | rect. | 7 | 1 |
| 802 | 163.16 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 19 | 17 |
| 852 | 163.21 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 5 | 3 |
| 872 | 163.22 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 887 | 163.24 | humidity | 60.0 | 43200 | < th | dose independent | rect. | 8 | 4 |
| 895 | 163.25 | radiation | 20.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 937 | 163.30 | wind | 7.0 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 980 | 163.35 | temperature | 20.0 | 43200 | > th | dose independent | rect. | 6 | 1 |