Os03g0729700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF558 family protein.
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Os03g0729700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF558 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 116.71 | 0.508 | 9.64 | -0.8 | 1.76 | -1.02 | -0.162 | 0.544 | -1.03 | 18.5 | 19.71 | 1086 | -- | -- |
| 116.92 | 0.504 | 9.64 | -0.804 | 1.73 | -1.02 | -0.35 | -- | -1.02 | 18.6 | 20 | 1052 | -- | -- |
| 116.49 | 0.503 | 9.65 | -0.785 | 1.74 | -1.01 | -- | 0.577 | -1.03 | 18.6 | 19.99 | 1052 | -- | -- |
| 117.12 | 0.504 | 9.63 | -0.762 | 1.7 | -1.03 | -- | -- | -1 | 18.6 | 19.99 | 1047 | -- | -- |
| 133.99 | 0.539 | 9.58 | -0.781 | -- | -2.83 | -- | 1.96 | -1.04 | -- | 4.88 | 868 | -- | -- |
| 143.39 | 0.561 | 9.61 | -0.692 | 2.13 | -- | -0.236 | -- | -0.844 | 19 | -- | -- | -- | -- |
| 143.53 | 0.561 | 9.61 | -0.688 | 2.13 | -- | -- | -- | -0.845 | 19 | -- | -- | -- | -- |
| 132.97 | 0.537 | 9.59 | -0.754 | -- | -2.87 | -- | -- | -0.98 | -- | 4.73 | 878 | -- | -- |
| 132.67 | 0.536 | 9.64 | -- | 1.72 | -1.01 | -- | -- | -1 | 18.6 | 19.99 | 1050 | -- | -- |
| 382.37 | 0.914 | 9.57 | -0.73 | -- | -- | -- | -- | -0.883 | -- | -- | -- | -- | -- |
| 156.01 | 0.584 | 9.6 | -- | 2.14 | -- | -- | -- | -0.768 | 19 | -- | -- | -- | -- |
| 147.4 | 0.565 | 9.57 | -- | -- | -2.86 | -- | -- | -0.898 | -- | 4.98 | 873 | -- | -- |
| 396.45 | 0.929 | 9.55 | -- | -- | -- | -- | -- | -0.802 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 114.37 | temperature | 30 | 90 | < th | dose independent | rect. | 6 | 17 |
| 2 | 115.14 | wind | 5 | 14400 | > th | dose dependent | rect. | 7 | 2 |
| 3 | 115.33 | temperature | 20 | 270 | > th | dose independent | rect. | 4 | 5 |
| 5 | 115.74 | wind | 5 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 6 | 115.91 | wind | 5 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 7 | 115.92 | temperature | 30 | 270 | < th | dose dependent | rect. | 5 | 16 |
| 8 | 115.92 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 15 | 116.16 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 20 |
| 26 | 116.33 | temperature | 10 | 270 | > th | dose dependent | rect. | 9 | 19 |
| 30 | 116.38 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 12 |
| 33 | 116.40 | radiation | 40 | 270 | < th | dose independent | rect. | 4 | 18 |
| 34 | 116.41 | temperature | 25 | 270 | > th | dose dependent | rect. | 9 | 6 |
| 37 | 116.44 | temperature | 25 | 90 | > th | dose dependent | rect. | 9 | 10 |
| 54 | 116.57 | temperature | 25 | 10 | > th | dose dependent | rect. | 11 | 11 |
| 56 | 116.58 | radiation | 40 | 270 | < th | dose independent | rect. | 3 | 22 |
| 57 | 116.58 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 9 |
| 72 | 116.69 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |
| 74 | 116.70 | temperature | 30 | 270 | < th | dose independent | rect. | 4 | 17 |
| 82 | 116.74 | temperature | 20 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 91 | 116.78 | temperature | 20 | 14400 | > th | dose independent | rect. | 17 | 8 |
| 102 | 116.82 | wind | 5 | 14400 | > th | dose independent | rect. | 5 | 5 |
| 109 | 116.83 | humidity | 60 | 270 | > th | dose dependent | rect. | 4 | 18 |
| 129 | 116.92 | radiation | 40 | 270 | < th | dose dependent | rect. | 4 | 18 |
| 132 | 116.94 | wind | 5 | 14400 | < th | dose independent | rect. | 5 | 5 |
| 144 | 117.01 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 147 | 117.02 | temperature | 25 | 270 | > th | dose dependent | sin | 2 | NA |
| 162 | 117.12 | temperature | 20 | 14400 | > th | dose independent | sin | 16 | NA |
| 164 | 117.12 | radiation | 20 | 270 | < th | dose independent | rect. | 4 | 18 |
| 175 | 117.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 19 | 21 |
| 176 | 117.19 | temperature | 25 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 177 | 117.20 | temperature | 20 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 178 | 117.20 | temperature | 20 | 14400 | < th | dose independent | rect. | 20 | 4 |
| 179 | 117.20 | temperature | 20 | 14400 | < th | dose independent | rect. | 19 | 6 |
| 190 | 117.26 | temperature | 20 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 200 | 117.31 | temperature | 20 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 231 | 117.47 | wind | 7 | 270 | < th | dose independent | rect. | 9 | 19 |
| 264 | 117.63 | radiation | 40 | 270 | < th | dose dependent | rect. | 3 | 22 |
| 266 | 117.65 | temperature | 20 | 14400 | < th | dose independent | sin | 16 | NA |
| 310 | 117.85 | wind | 5 | 14400 | > th | dose dependent | rect. | 5 | 5 |
| 316 | 117.88 | temperature | 30 | 270 | < th | dose dependent | sin | 23 | NA |
| 317 | 117.88 | temperature | 25 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 337 | 117.96 | temperature | 25 | 90 | > th | dose dependent | sin | 22 | NA |
| 375 | 118.10 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 13 |
| 385 | 118.16 | humidity | 70 | 90 | > th | dose independent | rect. | 6 | 17 |
| 412 | 118.26 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 7 |
| 434 | 118.31 | temperature | 30 | 90 | < th | dose dependent | sin | 21 | NA |
| 455 | 118.36 | temperature | 25 | 14400 | < th | dose dependent | sin | 21 | NA |
| 505 | 118.48 | temperature | 25 | 10 | > th | dose dependent | sin | 20 | NA |
| 589 | 118.70 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 605 | 118.72 | temperature | 25 | 14400 | < th | dose dependent | rect. | 6 | 9 |
| 630 | 118.78 | humidity | 70 | 270 | > th | dose independent | rect. | 4 | 17 |
| 633 | 118.78 | wind | 9 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 714 | 118.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 733 | 119.00 | temperature | 25 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 747 | 119.02 | wind | 5 | 14400 | > th | dose independent | rect. | 20 | 15 |
| 795 | 119.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 807 | 119.13 | temperature | 25 | 14400 | < th | dose dependent | rect. | 9 | 2 |
| 841 | 119.19 | wind | 5 | 14400 | < th | dose independent | rect. | 20 | 15 |
| 851 | 119.21 | temperature | 20 | 14400 | > th | dose independent | rect. | 18 | 22 |
| 897 | 119.27 | temperature | 10 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 909 | 119.29 | temperature | 20 | 14400 | > th | dose independent | no | NA | NA |
| 910 | 119.29 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 9 |
| 915 | 119.29 | humidity | 80 | 14400 | > th | dose dependent | rect. | 17 | 2 |
| 926 | 119.31 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 17 |
| 930 | 119.31 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 940 | 119.33 | wind | 7 | 270 | < th | dose independent | rect. | 8 | 22 |
| 950 | 119.36 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 17 |