BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0729700 Os03g0729700|AK067533
         (330 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G50000.1  | chr1:18515183-18517244 REVERSE LENGTH=297          315   3e-86

>AT1G50000.1 | chr1:18515183-18517244 REVERSE LENGTH=297
          Length = 296

 Score =  315 bits (806), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 152/240 (63%), Positives = 183/240 (76%)

Query: 83  PRFHSPTLPSSKGEEVRIQGDEFWHMTRVLRLGINDRVELFDGAGGLVEGSIQKVDKGGS 142
           PRF S  LPS KG  VR+QG EFWHM +VLRL   DRVELF+G GGLVEG IQ +DK G 
Sbjct: 54  PRFFSDDLPSRKGGVVRVQGSEFWHMAKVLRLKQEDRVELFNGKGGLVEGCIQSIDKTGV 113

Query: 143 DVKLLEDARLIAPDGIQWHVYAAFGTLKGGRADWLVEKCTELGACSVTPLLTERCHTIAE 202
           D    ED ++I P G+QW V+AAFGTLKGGRADWL+EKCTELGA SVTPLLTER   I+E
Sbjct: 114 DFIAQEDQKVILPQGMQWQVFAAFGTLKGGRADWLIEKCTELGASSVTPLLTERSPIISE 173

Query: 203 NRVDRLQRLVLAAVKQCQRIHGMLLNPPIQIADLQPVVSQSKLAFVASAESPPLLSTLPK 262
           NRVDRL+R+  AA KQCQR+H M+LNPPI+   L   + +SKL  VA+AE+ PLL+ +  
Sbjct: 174 NRVDRLERVSFAAAKQCQRLHQMVLNPPIKFGTLLDHILKSKLCLVATAEAKPLLNAVNS 233

Query: 263 SCNEESGLLIVGPEGDFTEEEVNVLKASGAVPVGLGPCRLRVETATISLLSALMLWSDAH 322
           S  E SGLLIVGPEGDFT++EV ++  +G   VGLGP RLRVETATI+LL+ L++WSD+ 
Sbjct: 234 SAKESSGLLIVGPEGDFTKKEVEMMLEAGGTAVGLGPHRLRVETATIALLATLVMWSDSQ 293



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,407,869
Number of extensions: 243889
Number of successful extensions: 523
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 523
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 231
Effective length of database: 8,392,385
Effective search space: 1938640935
Effective search space used: 1938640935
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)