Os03g0728500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SMAD/FHA domain containing protein.
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Os03g0728500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SMAD/FHA domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 144.57 | 0.565 | 8.8 | 1.46 | 3.17 | 0.287 | -2.77 | 3.71 | 0.541 | 21.6 | 20.5 | 1700 | -- | -- |
| 169.72 | 0.607 | 8.93 | 0.704 | 3.18 | 0.389 | -2.78 | -- | 0.294 | 21.4 | 24.8 | 1042 | -- | -- |
| 170.34 | 0.613 | 8.87 | 1.25 | 3.2 | -0.0333 | -- | 2.29 | 0.476 | 21.6 | 20.5 | 1700 | -- | -- |
| 183.05 | 0.63 | 8.88 | 1.41 | 3.22 | -0.922 | -- | -- | 0.525 | 21.6 | 8.632 | 47520 | -- | -- |
| 753.42 | 1.29 | 8.76 | 1.4 | -- | -0.707 | -- | 2.11 | 0.577 | -- | 19.9 | 1641 | -- | -- |
| 171.35 | 0.614 | 8.92 | 0.699 | 3.19 | -- | -2.75 | -- | 0.35 | 21.6 | -- | -- | -- | -- |
| 199.57 | 0.662 | 8.92 | 0.803 | 3.21 | -- | -- | -- | 0.355 | 21.6 | -- | -- | -- | -- |
| 776.05 | 1.3 | 8.8 | 1.05 | -- | -0.841 | -- | -- | 0.498 | -- | 19.9 | 1641 | -- | -- |
| 203.29 | 0.664 | 8.98 | -- | 3.2 | 0.535 | -- | -- | 0.0796 | 21.6 | 22 | 47520 | -- | -- |
| 806.73 | 1.33 | 8.83 | 0.828 | -- | -- | -- | -- | 0.348 | -- | -- | -- | -- | -- |
| 216.57 | 0.688 | 8.94 | -- | 3.21 | -- | -- | -- | 0.266 | 21.6 | -- | -- | -- | -- |
| 771.75 | 1.29 | 8.94 | -- | -- | 0.984 | -- | -- | -0.0133 | -- | 21.8 | 740 | -- | -- |
| 824.8 | 1.34 | 8.85 | -- | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.43 | temperature | 20 | 4320 | < th | dose independent | rect. | 13 | 10 |
| 2 | 139.46 | temperature | 20 | 4320 | < th | dose independent | rect. | 15 | 8 |
| 8 | 140.03 | temperature | 20 | 4320 | > th | dose independent | rect. | 13 | 10 |
| 29 | 141.14 | temperature | 15 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 42 | 141.88 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 21 |
| 50 | 142.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 23 | 21 |
| 76 | 142.71 | temperature | 20 | 4320 | < th | dose independent | sin | 19 | NA |
| 77 | 142.74 | temperature | 20 | 4320 | > th | dose independent | sin | 19 | NA |
| 80 | 142.80 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 16 |
| 121 | 143.42 | temperature | 15 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 133 | 143.68 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 1 |
| 156 | 144.04 | temperature | 20 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 158 | 144.10 | temperature | 10 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 159 | 144.11 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 1 |
| 175 | 144.39 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 18 |
| 185 | 144.52 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 18 |
| 200 | 144.64 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 10 |
| 286 | 145.17 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 5 |
| 386 | 145.64 | temperature | 25 | 4320 | < th | dose dependent | sin | 19 | NA |
| 483 | 146.11 | humidity | 50 | 14400 | > th | dose independent | rect. | 5 | 4 |
| 497 | 146.15 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 583 | 146.46 | temperature | 25 | 4320 | < th | dose dependent | rect. | 12 | 1 |
| 623 | 146.58 | humidity | 50 | 14400 | > th | dose independent | rect. | 18 | 14 |
| 636 | 146.60 | temperature | 10 | 90 | > th | dose dependent | sin | 3 | NA |
| 644 | 146.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 682 | 146.73 | temperature | 20 | 1440 | > th | dose independent | rect. | 14 | 22 |
| 719 | 146.80 | temperature | 20 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 720 | 146.80 | temperature | 15 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 731 | 146.82 | temperature | 15 | 270 | > th | dose dependent | sin | 5 | NA |
| 756 | 146.88 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 758 | 146.88 | temperature | 20 | 1440 | < th | dose independent | rect. | 14 | 22 |
| 778 | 146.92 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 779 | 146.92 | temperature | 10 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 843 | 147.06 | temperature | 20 | 1440 | < th | dose independent | no | NA | NA |
| 852 | 147.06 | temperature | 15 | 10 | > th | dose dependent | rect. | 19 | 23 |
| 942 | 147.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 963 | 147.28 | temperature | 20 | 1440 | > th | dose independent | rect. | 4 | 8 |
| 966 | 147.28 | temperature | 30 | 90 | < th | dose dependent | sin | 2 | NA |
| 980 | 147.30 | temperature | 20 | 1440 | < th | dose independent | rect. | 4 | 8 |