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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0727600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : 1-aminocyclopropane-1-carboxylate synthase 1 (EC 4.4.1.14) (ACC synthase 1) (S-adenosyl-L-methionine methylthioadenosine-lyase 1).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.59 (0.0375) R2 : 0.268
β1 : 0.957 (0.146) R2dD : 0.083 R2D : 0.0272
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.84 (0.214) R2dE : 0.145 R2E : 0.103
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.413 (0.0832) R2dN8 : 0.0588 R2N8 : 0.108
σ : 0.692
deviance : 221.06
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 0.5371
memory length : 1458
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
215.25 0.689 4.63 0.739 0.303 2.22 -0.514 1.92 -0.451 2.3 0.5676 1429 -- --
216.68 0.686 4.6 0.931 0.304 1.79 -0.598 -- -0.426 1.96 0.5438 1421 -- --
215.49 0.684 4.63 0.693 0.319 2.48 -- 2.83 -0.45 3.16 0.4146 1429 -- --
217.76 0.687 4.59 0.93 0.281 1.78 -- -- -0.423 3.38 0.544 1434 -- --
219.78 0.69 4.64 0.752 -- 2.45 -- 2.51 -0.449 -- 0.36 1448 -- --
251.11 0.743 4.65 0.465 0.228 -- -0.797 -- -0.65 1.91 -- -- -- --
252.94 0.745 4.65 0.488 0.259 -- -- -- -0.647 3.55 -- -- -- --
221.06 0.692 4.59 0.957 -- 1.84 -- -- -0.413 -- 0.5371 1458 -- --
238.4 0.719 4.62 -- 0.295 1.27 -- -- -0.553 2.89 1 1431 -- --
256.69 0.749 4.65 0.499 -- -- -- -- -0.64 -- -- -- -- --
259.21 0.753 4.66 -- 0.269 -- -- -- -0.701 3.54 -- -- -- --
241.5 0.724 4.62 -- -- 1.37 -- -- -0.554 -- 0.83 1511 -- --
263.24 0.757 4.66 -- -- -- -- -- -0.695 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 206.90 wind 9.0 43200 > th dose independent rect. 18 3
2 206.91 wind 9.0 43200 < th dose independent rect. 18 3
4 208.08 wind 9.0 43200 > th dose dependent rect. 18 5
13 211.50 wind 9.0 43200 > th dose dependent rect. 18 7
15 211.78 wind 9.0 43200 > th dose dependent rect. 18 12
17 211.99 wind 9.0 43200 > th dose independent rect. 18 7
21 212.36 precipitation 0.1 43200 > th dose dependent rect. 20 2
27 213.04 radiation 1.0 1440 < th dose dependent rect. 8 21
29 213.29 radiation 1.0 1440 < th dose dependent rect. 8 14
40 213.46 wind 9.0 43200 < th dose independent rect. 18 7
44 213.58 radiation 1.0 1440 < th dose dependent rect. 14 15
47 213.68 radiation 1.0 1440 < th dose dependent sin 17 NA
48 213.69 humidity 90.0 43200 < th dose independent rect. 22 2
50 213.74 radiation 1.0 1440 < th dose dependent rect. 14 8
52 213.76 humidity 90.0 43200 < th dose independent rect. 20 4
53 213.77 radiation 1.0 1440 < th dose dependent rect. 14 5
58 213.80 radiation 1.0 1440 < th dose dependent rect. 14 11
78 213.96 radiation 1.0 4320 < th dose dependent rect. 17 1
93 214.12 wind 1.0 43200 < th dose dependent rect. 19 2
97 214.18 humidity 80.0 43200 > th dose dependent rect. 18 6
98 214.19 wind 9.0 43200 > th dose independent rect. 18 12
146 214.47 humidity 90.0 43200 < th dose independent rect. 19 6
151 214.60 humidity 90.0 43200 > th dose independent rect. 21 1
175 215.16 precipitation 0.1 43200 > th dose independent rect. 20 2
176 215.17 precipitation 0.1 43200 < th dose independent rect. 20 2
177 215.17 precipitation 0.1 43200 < th dose dependent rect. 20 2
182 215.38 wind 7.0 43200 < th dose independent rect. 14 7
185 215.51 radiation 1.0 1440 < th dose dependent rect. 17 5
193 215.54 radiation 1.0 1440 < th dose dependent rect. 17 8
197 215.59 wind 7.0 43200 > th dose independent rect. 14 7
211 215.69 wind 9.0 43200 < th dose independent rect. 18 12
236 216.07 humidity 90.0 43200 > th dose independent rect. 5 1
243 216.14 humidity 90.0 43200 > th dose dependent rect. 21 3
251 216.22 wind 5.0 43200 > th dose dependent rect. 13 8
257 216.28 radiation 1.0 4320 < th dose independent rect. 17 1
262 216.35 radiation 1.0 4320 < th dose independent rect. 17 5
282 216.59 humidity 90.0 43200 > th dose independent rect. 4 3
302 216.74 radiation 1.0 4320 > th dose independent rect. 17 2
315 216.76 humidity 90.0 43200 < th dose independent rect. 19 17
324 216.79 wind 7.0 43200 < th dose independent rect. 14 11
338 216.87 wind 5.0 43200 > th dose dependent rect. 13 12
350 216.95 wind 7.0 43200 > th dose independent rect. 14 11
375 217.14 humidity 90.0 43200 > th dose independent rect. 20 16
381 217.17 radiation 1.0 720 < th dose dependent rect. 5 14
407 217.32 radiation 1.0 43200 < th dose dependent rect. 21 4
412 217.33 humidity 90.0 43200 > th dose dependent rect. 19 12
424 217.37 wind 9.0 43200 < th dose dependent rect. 20 1
427 217.38 radiation 1.0 1440 < th dose independent rect. 8 14
435 217.40 radiation 1.0 1440 < th dose independent rect. 8 11
441 217.42 wind 5.0 43200 > th dose independent rect. 11 11
442 217.42 radiation 1.0 1440 < th dose independent rect. 8 17
453 217.47 wind 5.0 43200 > th dose independent rect. 11 14
464 217.52 temperature 25.0 1440 < th dose independent rect. 15 6
494 217.60 radiation 10.0 14400 < th dose dependent rect. 4 1
507 217.64 temperature 25.0 4320 < th dose independent rect. 17 1
512 217.66 humidity 90.0 43200 > th dose dependent sin 9 NA
530 217.71 humidity 90.0 43200 > th dose dependent rect. 5 1
590 217.87 temperature 25.0 4320 < th dose independent rect. 16 3
592 217.87 atmosphere 995.0 43200 > th dose independent rect. 15 8
612 217.92 temperature 25.0 4320 > th dose independent rect. 17 1
619 217.93 atmosphere 995.0 43200 < th dose independent rect. 15 9
632 217.95 atmosphere 995.0 43200 < th dose independent rect. 17 5
668 217.99 humidity 80.0 43200 > th dose dependent rect. 4 22
669 218.00 temperature 25.0 1440 > th dose independent rect. 15 6
675 218.01 atmosphere 995.0 43200 > th dose independent rect. 16 6
690 218.03 humidity 90.0 43200 > th dose independent sin 8 NA
705 218.06 radiation 1.0 1440 < th dose independent sin 17 NA
714 218.08 radiation 1.0 1440 < th dose independent rect. 14 8
719 218.09 wind 5.0 43200 < th dose independent rect. 11 11
725 218.10 radiation 1.0 1440 < th dose independent rect. 14 5
729 218.10 radiation 1.0 1440 < th dose independent rect. 14 11
740 218.12 radiation 10.0 14400 < th dose independent rect. 16 14
766 218.16 wind 7.0 43200 < th dose independent sin 17 NA
775 218.17 wind 5.0 43200 > th dose independent rect. 13 1
776 218.17 wind 5.0 43200 > th dose independent rect. 11 4
799 218.20 wind 7.0 43200 < th dose independent rect. 13 17
822 218.23 wind 5.0 43200 > th dose dependent sin 18 NA
837 218.24 radiation 1.0 1440 < th dose dependent rect. 4 17
876 218.28 humidity 90.0 43200 < th dose independent sin 15 NA
901 218.29 radiation 1.0 1440 < th dose dependent rect. 11 23
908 218.30 radiation 1.0 1440 < th dose dependent rect. 24 19
915 218.31 wind 5.0 43200 < th dose independent rect. 11 4
931 218.32 radiation 1.0 1440 < th dose dependent no NA NA
937 218.32 radiation 1.0 1440 < th dose dependent rect. 20 23
963 218.35 wind 7.0 43200 < th dose independent rect. 14 2
971 218.36 atmosphere 995.0 43200 < th dose dependent rect. 16 6
990 218.38 wind 7.0 43200 > th dose independent rect. 13 17
996 218.39 temperature 25.0 4320 > th dose independent rect. 16 3