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Os03g0722600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : CAP protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.6 (0.011) R2 : 0.512
β1 : -0.88 (0.0403) R2dD : 0.529 R2D : 0.47
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.126 (0.0235) R2dN8 : 0.0413 R2N8 : -0.0175
σ : 0.207
deviance : 19.55
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.14 0.17 11.6 -1.15 0.248 0.394 -0.164 2.39 -0.191 6.9 0.1699 1400 -- --
15.44 0.184 11.6 -0.887 0.245 -0.132 -0.0763 -- -0.131 5.5 20.09 2734 -- --
13.1 0.169 11.6 -1.15 0.252 0.394 -- 2.41 -0.191 7.11 0.0003891 1421 -- --
15.29 0.182 11.6 -0.928 0.261 0.122 -- -- -0.0977 7.47 54.06 13629 -- --
16.24 0.188 11.6 -1.15 -- 0.498 -- 2.64 -0.196 -- 1.754e-05 1379 -- --
15.76 0.186 11.6 -0.883 0.266 -- -0.0142 -- -0.13 7.52 -- -- -- --
15.76 0.186 11.6 -0.884 0.266 -- -- -- -0.13 7.53 -- -- -- --
16.6 0.19 11.6 -0.858 -- 0.368 -- -- -0.0887 -- 4.622 2315 -- --
32.02 0.264 11.6 -- 0.264 -0.421 -- -- -0.0342 7.64 81.53 47520 -- --
19.55 0.207 11.6 -0.88 -- -- -- -- -0.126 -- -- -- -- --
36.34 0.282 11.6 -- 0.259 -- -- -- -0.0319 7.76 -- -- -- --
30.24 0.256 11.6 -- -- 0.382 -- -- 0.032 -- 0.01 28255 -- --
39.96 0.295 11.6 -- -- -- -- -- -0.0285 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 12.92 temperature 15.0 270 > th dose independent rect. 17 22
4 13.25 radiation 1.0 1440 < th dose dependent rect. 18 22
5 13.26 temperature 15.0 270 > th dose independent rect. 9 14
7 13.32 humidity 70.0 1440 > th dose dependent rect. 1 15
9 13.33 temperature 20.0 1440 < th dose dependent rect. 8 10
12 13.36 humidity 80.0 1440 > th dose dependent rect. 9 5
24 13.41 humidity 80.0 1440 > th dose dependent rect. 11 2
44 13.49 radiation 1.0 1440 < th dose dependent rect. 22 18
49 13.50 radiation 1.0 1440 < th dose dependent rect. 4 12
52 13.50 radiation 1.0 1440 < th dose dependent rect. 24 16
54 13.51 humidity 70.0 1440 > th dose dependent sin 3 NA
59 13.52 temperature 20.0 1440 < th dose dependent rect. 8 1
70 13.54 humidity 90.0 720 < th dose independent rect. 10 6
77 13.54 radiation 1.0 1440 < th dose dependent rect. 7 23
78 13.55 temperature 15.0 1440 > th dose independent rect. 10 7
94 13.56 radiation 1.0 1440 < th dose dependent sin 1 NA
107 13.59 humidity 90.0 1440 < th dose independent rect. 11 2
108 13.59 temperature 15.0 720 > th dose independent rect. 4 17
126 13.62 temperature 15.0 1440 > th dose independent rect. 17 3
127 13.62 precipitation 0.1 720 > th dose independent rect. 6 12
135 13.63 radiation 1.0 1440 < th dose independent rect. 18 22
144 13.64 radiation 1.0 1440 > th dose independent rect. 18 22
147 13.64 radiation 1.0 1440 < th dose dependent rect. 7 9
159 13.65 radiation 1.0 1440 < th dose independent rect. 8 7
166 13.65 radiation 1.0 1440 < th dose dependent rect. 8 7
196 13.68 temperature 15.0 1440 > th dose independent rect. 6 11
203 13.68 radiation 1.0 1440 < th dose dependent rect. 7 16
204 13.68 radiation 1.0 1440 < th dose dependent rect. 7 18
211 13.69 humidity 90.0 1440 > th dose independent rect. 9 6
214 13.69 temperature 15.0 1440 > th dose independent rect. 17 13
218 13.69 radiation 1.0 1440 < th dose dependent no NA NA
226 13.69 radiation 1.0 1440 < th dose dependent rect. 7 12
227 13.69 precipitation 0.1 720 > th dose dependent rect. 6 12
270 13.69 radiation 1.0 1440 < th dose dependent rect. 12 23
277 13.70 radiation 1.0 1440 > th dose independent rect. 8 7
300 13.71 radiation 1.0 1440 > th dose independent rect. 7 23
301 13.71 radiation 1.0 1440 < th dose independent rect. 7 23
334 13.73 temperature 15.0 1440 > th dose independent rect. 10 4
345 13.74 humidity 80.0 1440 > th dose independent rect. 10 3
349 13.74 humidity 90.0 10 < th dose independent rect. 20 20
401 13.76 radiation 1.0 1440 < th dose independent rect. 7 9
405 13.76 temperature 15.0 1440 > th dose independent rect. 14 16
407 13.76 temperature 15.0 1440 > th dose independent rect. 17 17
414 13.76 humidity 90.0 4320 > th dose dependent rect. 3 1
415 13.76 humidity 90.0 4320 > th dose dependent rect. 1 3
428 13.76 radiation 1.0 1440 < th dose dependent rect. 15 23
429 13.77 radiation 1.0 1440 > th dose independent sin 1 NA
430 13.77 radiation 1.0 1440 < th dose independent sin 1 NA
459 13.78 radiation 1.0 1440 > th dose independent rect. 7 9
489 13.79 radiation 1.0 1440 > th dose independent rect. 7 12
519 13.80 radiation 1.0 1440 < th dose independent rect. 9 2
528 13.80 radiation 1.0 1440 < th dose independent rect. 7 18
531 13.80 temperature 15.0 1440 > th dose independent rect. 14 20
533 13.80 radiation 1.0 1440 < th dose dependent rect. 9 2
547 13.81 temperature 15.0 14400 > th dose independent rect. 7 2
551 13.81 radiation 1.0 1440 < th dose independent rect. 5 11
552 13.81 radiation 1.0 1440 < th dose independent rect. 7 12
560 13.81 radiation 1.0 1440 < th dose independent rect. 20 20
590 13.82 temperature 15.0 720 > th dose independent rect. 11 10
591 13.82 radiation 1.0 1440 > th dose independent rect. 5 11
604 13.82 humidity 90.0 270 < th dose independent rect. 9 22
632 13.83 radiation 1.0 1440 > th dose independent rect. 9 2
674 13.83 humidity 80.0 720 > th dose dependent rect. 5 22
677 13.84 humidity 90.0 4320 > th dose independent rect. 1 3
691 13.84 precipitation 0.1 720 > th dose dependent sin 23 NA
695 13.84 temperature 20.0 1440 < th dose dependent rect. 10 8
711 13.84 humidity 80.0 720 > th dose dependent rect. 8 22
717 13.85 wind 9.0 1440 < th dose independent rect. 1 9
756 13.86 humidity 90.0 1440 > th dose independent sin 0 NA
758 13.86 humidity 90.0 4320 > th dose independent rect. 23 6
799 13.87 precipitation 0.1 720 > th dose independent sin 23 NA
817 13.87 humidity 90.0 1440 < th dose independent rect. 1 16
836 13.87 humidity 80.0 720 > th dose dependent rect. 8 20
849 13.88 radiation 1.0 1440 < th dose independent no NA NA
850 13.88 precipitation 0.1 720 < th dose independent sin 22 NA
852 13.88 precipitation 0.1 1440 > th dose independent rect. 8 5
857 13.88 radiation 1.0 1440 < th dose independent rect. 4 17
870 13.88 radiation 1.0 1440 < th dose independent rect. 24 21
880 13.88 radiation 1.0 1440 < th dose independent rect. 20 23
884 13.88 precipitation 0.1 720 < th dose dependent sin 22 NA
885 13.88 temperature 20.0 1440 < th dose dependent rect. 11 3
889 13.88 precipitation 0.1 1440 > th dose dependent rect. 8 5
912 13.89 humidity 90.0 1440 < th dose independent sin 1 NA
914 13.89 radiation 1.0 1440 > th dose independent no NA NA
915 13.89 wind 9.0 1440 < th dose independent rect. 9 1
929 13.89 humidity 90.0 720 < th dose independent rect. 9 14
930 13.89 radiation 1.0 1440 > th dose independent rect. 5 14
931 13.89 radiation 1.0 1440 < th dose independent rect. 5 14