Os03g0721400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF841, eukaryotic family protein.
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Os03g0721400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF841, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.49 | 0.237 | 10.2 | 1.31 | 0.645 | -0.862 | -0.301 | 1.54 | 0.476 | 1.93 | 25.9 | 1396 | -- | -- |
| 27.55 | 0.244 | 10.2 | 0.874 | 0.661 | -0.725 | -0.237 | -- | 0.315 | 2.02 | 25.9 | 1395 | -- | -- |
| 25.83 | 0.237 | 10.2 | 1.3 | 0.649 | -0.865 | -- | 1.5 | 0.471 | 1.96 | 25.8 | 1387 | -- | -- |
| 27.64 | 0.245 | 10.2 | 0.857 | 0.659 | -0.74 | -- | -- | 0.314 | 1.96 | 25.9 | 1376 | -- | -- |
| 40.34 | 0.297 | 10.3 | 0.757 | -- | -0.5 | -- | 0.0866 | 0.227 | -- | 26.3 | 1615 | -- | -- |
| 44.71 | 0.313 | 10.3 | 0.585 | 0.574 | -- | -0.277 | -- | 0.0824 | 1.91 | -- | -- | -- | -- |
| 45 | 0.314 | 10.3 | 0.594 | 0.574 | -- | -- | -- | 0.084 | 1.92 | -- | -- | -- | -- |
| 40.37 | 0.297 | 10.3 | 0.738 | -- | -0.498 | -- | -- | 0.222 | -- | 26.3 | 1615 | -- | -- |
| 44.56 | 0.311 | 10.3 | -- | 0.666 | -0.555 | -- | -- | 0.196 | 2.03 | 25.5 | 1343 | -- | -- |
| 64.87 | 0.376 | 10.3 | 0.617 | -- | -- | -- | -- | 0.0973 | -- | -- | -- | -- | -- |
| 54.29 | 0.345 | 10.3 | -- | 0.585 | -- | -- | -- | 0.0179 | 1.95 | -- | -- | -- | -- |
| 54.51 | 0.345 | 10.3 | -- | -- | -0.451 | -- | -- | 0.129 | -- | 26.3 | 1615 | -- | -- |
| 74.93 | 0.404 | 10.3 | -- | -- | -- | -- | -- | 0.0288 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.55 | temperature | 25 | 1440 | > th | dose independent | rect. | 16 | 6 |
| 6 | 24.83 | temperature | 25 | 1440 | < th | dose independent | rect. | 16 | 6 |
| 10 | 24.95 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 1 |
| 15 | 25.06 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 22 | 25.12 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 33 | 25.21 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 8 |
| 64 | 25.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 19 | 1 |
| 66 | 25.36 | temperature | 25 | 1440 | > th | dose dependent | sin | 19 | NA |
| 82 | 25.39 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 99 | 25.43 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 16 |
| 100 | 25.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 20 |
| 211 | 25.64 | temperature | 25 | 1440 | < th | dose independent | rect. | 19 | 1 |
| 336 | 25.81 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 17 |
| 364 | 25.84 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 15 |
| 380 | 25.85 | temperature | 20 | 90 | > th | dose dependent | rect. | 6 | 23 |
| 420 | 25.89 | temperature | 20 | 90 | > th | dose dependent | no | NA | NA |
| 446 | 25.90 | temperature | 20 | 90 | > th | dose dependent | rect. | 23 | 23 |
| 449 | 25.91 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 530 | 25.99 | temperature | 25 | 1440 | < th | dose independent | rect. | 6 | 17 |
| 534 | 25.99 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 546 | 26.02 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 561 | 26.05 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 16 |
| 714 | 26.32 | temperature | 25 | 1440 | < th | dose independent | sin | 18 | NA |
| 790 | 26.46 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 831 | 26.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |
| 848 | 26.57 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 869 | 26.61 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 875 | 26.62 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 876 | 26.62 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 900 | 26.67 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 942 | 26.73 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |