BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0721400 Os03g0721400|AK102605
(209 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G06660.1 | chr5:2046863-2047453 FORWARD LENGTH=197 178 2e-45
AT3G12030.1 | chr3:3834465-3835055 REVERSE LENGTH=197 174 3e-44
>AT5G06660.1 | chr5:2046863-2047453 FORWARD LENGTH=197
Length = 196
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/212 (45%), Positives = 128/212 (60%), Gaps = 19/212 (8%)
Query: 1 MASAL---SSLRYGDSLSVVAISGATAVLCEAISWLLIYRTATYNSLRATIERHSRKLDA 57
MA+A+ +S +Y DSL+VV IS TA++CEAISW+LIYRT++Y SL+++I++ S+KL+
Sbjct: 1 MATAIPLFASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKSSIDKASKKLET 60
Query: 58 MKXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAKKMDRVETSLKDAARELSLSKLKSXXXX 117
MK + KK+DRVE+SLK+++R+LSL K KS
Sbjct: 61 MKTDNPSSKLTNKKS---------------KTKKIDRVESSLKESSRDLSLFKFKSGAVV 105
Query: 118 XXXXXXXXXXXNSLFEGRAVAKLPFAPVPLVQRMSHRGVPGNDPTDCSMVFLYFLCSISI 177
NSLFEG+ VAKLPF P+ +V++MSHRG+ G+D TDCSM FLY LCSISI
Sbjct: 106 ALVLFVVFGLLNSLFEGKVVAKLPFHPITIVRKMSHRGLKGDDSTDCSMAFLYLLCSISI 165
Query: 178 RTNLQKXXXXXXXXXXXXXXXXXXXMPDPKVN 209
RTNLQK MPDPK N
Sbjct: 166 RTNLQK-FLGFSPPRGAAGAGGLFPMPDPKTN 196
>AT3G12030.1 | chr3:3834465-3835055 REVERSE LENGTH=197
Length = 196
Score = 174 bits (441), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 95/205 (46%), Positives = 123/205 (60%), Gaps = 16/205 (7%)
Query: 5 LSSLRYGDSLSVVAISGATAVLCEAISWLLIYRTATYNSLRATIERHSRKLDAMKXXXXX 64
+S +Y DSL+VV IS TA++CEAISW+LIYRT++Y SL+ +I++ ++KL+ MK
Sbjct: 8 FASFKYADSLTVVGISFCTALVCEAISWILIYRTSSYKSLKYSIDKATKKLETMKTENPS 67
Query: 65 XXXXXXXXXXXXXXXXXXXXXXXRAKKMDRVETSLKDAARELSLSKLKSXXXXXXXXXXX 124
+ KK+DRVETSLK+++R+LSL K KS
Sbjct: 68 SKLSIKKS---------------KTKKIDRVETSLKESSRDLSLFKFKSGAVVALVLFVV 112
Query: 125 XXXXNSLFEGRAVAKLPFAPVPLVQRMSHRGVPGNDPTDCSMVFLYFLCSISIRTNLQKX 184
NSLFEG+ VAKLPF P+ +V++MSHRG+ G+DPTDCSM FLY LCSISIRTNLQK
Sbjct: 113 FGLLNSLFEGKVVAKLPFHPITIVKKMSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQK- 171
Query: 185 XXXXXXXXXXXXXXXXXXMPDPKVN 209
MPDPK N
Sbjct: 172 FLGFSPPRGAAGAGGLFPMPDPKTN 196
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.130 0.369
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,720,205
Number of extensions: 67947
Number of successful extensions: 149
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 149
Number of HSP's successfully gapped: 4
Length of query: 209
Length of database: 11,106,569
Length adjustment: 94
Effective length of query: 115
Effective length of database: 8,529,465
Effective search space: 980888475
Effective search space used: 980888475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)