Os03g0704200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, MYND-type domain containing protein.
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Os03g0704200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, MYND-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 75.75 | 0.409 | 8.61 | -1.85 | 1.51 | 2.24 | 0.404 | -2.68 | -0.135 | 22 | 21.4 | 53 | -- | -- |
| 81.07 | 0.419 | 8.56 | -1.37 | 1.52 | 2.09 | 0.876 | -- | 0.00441 | 22.1 | 21.49 | 47 | -- | -- |
| 76.29 | 0.407 | 8.61 | -1.87 | 1.5 | 2.24 | -- | -2.87 | -0.131 | 22 | 21.55 | 48 | -- | -- |
| 83.72 | 0.426 | 8.56 | -1.39 | 1.5 | 2.02 | -- | -- | 0.0111 | 21.9 | 21.53 | 47 | -- | -- |
| 130.47 | 0.532 | 8.57 | -1.9 | -- | 2.37 | -- | -2.08 | -0.113 | -- | 22.56 | 602 | -- | -- |
| 148.13 | 0.571 | 8.48 | -0.954 | 1.5 | -- | 0.494 | -- | 0.344 | 20 | -- | -- | -- | -- |
| 148.84 | 0.571 | 8.48 | -0.967 | 1.5 | -- | -- | -- | 0.345 | 19.9 | -- | -- | -- | -- |
| 133.55 | 0.538 | 8.52 | -1.49 | -- | 2.22 | -- | -- | -0.00902 | -- | 22.62 | 610 | -- | -- |
| 129.91 | 0.534 | 8.51 | -- | 1.51 | 1.61 | -- | -- | 0.243 | 21.5 | 22.79 | 47 | -- | -- |
| 270.93 | 0.769 | 8.45 | -0.983 | -- | -- | -- | -- | 0.325 | -- | -- | -- | -- | -- |
| 173.48 | 0.616 | 8.46 | -- | 1.5 | -- | -- | -- | 0.452 | 19.9 | -- | -- | -- | -- |
| 187.75 | 0.638 | 8.46 | -- | -- | 1.92 | -- | -- | 0.245 | -- | 23.64 | 580 | -- | -- |
| 296.42 | 0.804 | 8.42 | -- | -- | -- | -- | -- | 0.434 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 76.15 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 16 |
| 4 | 77.37 | temperature | 20 | 90 | > th | dose dependent | rect. | 2 | 23 |
| 8 | 77.94 | temperature | 20 | 90 | > th | dose dependent | rect. | 24 | 23 |
| 12 | 78.24 | temperature | 20 | 90 | > th | dose dependent | rect. | 4 | 19 |
| 19 | 78.84 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 45 | 80.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 75 | 81.77 | temperature | 10 | 90 | > th | dose dependent | sin | 23 | NA |
| 99 | 82.48 | temperature | 20 | 90 | > th | dose dependent | rect. | 15 | 23 |
| 101 | 82.50 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 8 |
| 109 | 82.67 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 111 | 82.69 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 143 | 83.28 | temperature | 10 | 720 | > th | dose dependent | sin | 3 | NA |
| 151 | 83.49 | temperature | 30 | 90 | < th | dose dependent | no | NA | NA |
| 152 | 83.53 | temperature | 15 | 720 | > th | dose dependent | rect. | 6 | 5 |
| 166 | 83.74 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 167 | 83.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 170 | 83.82 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 23 |
| 175 | 83.88 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 178 | 83.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 21 | 23 |
| 194 | 84.25 | temperature | 30 | 90 | < th | dose dependent | sin | 23 | NA |
| 196 | 84.27 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 213 | 84.48 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 221 | 84.66 | temperature | 20 | 90 | > th | dose dependent | rect. | 20 | 23 |
| 228 | 84.72 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 291 | 85.73 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 355 | 86.44 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 15 |
| 382 | 86.72 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 19 |
| 386 | 86.79 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 17 |
| 410 | 86.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 8 | 2 |
| 426 | 87.06 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 428 | 87.07 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 15 |
| 497 | 87.66 | temperature | 30 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 546 | 87.93 | temperature | 30 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 607 | 88.38 | temperature | 20 | 10 | > th | dose dependent | rect. | 16 | 23 |
| 995 | 90.38 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |