BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0704200 Os03g0704200|AK071176
         (174 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17900.1  | chr2:7773420-7776675 REVERSE LENGTH=481            161   2e-40
AT2G19640.2  | chr2:8491401-8492597 FORWARD LENGTH=399             48   2e-06

>AT2G17900.1 | chr2:7773420-7776675 REVERSE LENGTH=481
          Length = 480

 Score =  161 bits (407), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 71/143 (49%), Positives = 97/143 (67%)

Query: 29  LRDELAGRDLAVASVPGKGRGLFAARSFFPGEVVISQEPYASTPNKISVGSNCDNCFASR 88
           L+  L  R L V+++P KGR LF AR F PGEV++SQ+PY   PN  S  S CD CF + 
Sbjct: 4   LQRFLQDRCLGVSNLPQKGRSLFTARDFRPGEVILSQKPYICVPNNTSSESRCDGCFKTN 63

Query: 89  NLRKCSVCRVAWYCGSACQREEWKLHQLECRAIAALTEDRKKMLTPTIXXXXXXXXXXXX 148
           NL+KCS C+V WYCGS+CQ+ EWKLH+ EC+A+  L ++++K +TPTI            
Sbjct: 64  NLKKCSACQVVWYCGSSCQKSEWKLHRDECKALTRLEKEKRKFVTPTIRLMVRLYIKRNL 123

Query: 149 QDDKAIPSSGTDNYNLVDALESH 171
           Q++K +P + TDNY+LV+AL SH
Sbjct: 124 QNEKVLPITTTDNYSLVEALVSH 146



>AT2G19640.2 | chr2:8491401-8492597 FORWARD LENGTH=399
          Length = 398

 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 15/107 (14%)

Query: 38  LAVASVPGKGRGLFAARSFFPGEVVISQEP---YASTPN-KISVGSNCDNCF---ASRNL 90
           L VA + G+GR L AA+S   G+V++ + P   Y++ P    SV   CD+CF   AS   
Sbjct: 13  LRVAEIGGRGRSLVAAQSLRAGQVILRESPLLLYSAFPFLSSSVSPYCDHCFRLLASSAH 72

Query: 91  RKCSVCRVAWYCGSAC--QREEW------KLHQLECRAIAALTEDRK 129
           +KC  C +  +C   C      W      +LHQ    A +    DR+
Sbjct: 73  QKCQSCSLVSFCSPNCFASHTPWLCESLRRLHQSSSSAFSDQPSDRQ 119



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.133    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,548,445
Number of extensions: 128032
Number of successful extensions: 235
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 236
Number of HSP's successfully gapped: 2
Length of query: 174
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 82
Effective length of database: 8,584,297
Effective search space: 703912354
Effective search space used: 703912354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 108 (46.2 bits)