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Os03g0686900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Glycoside hydrolase, family 13, N-terminal domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0191) R2 : 0.511
β1 : -1.28 (0.0701) R2dD : 0.369 R2D : 0.175
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.625 (0.0409) R2dN8 : 0.336 R2N8 : 0.142
σ : 0.359
deviance : 59.17
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.79 0.3 11.3 -0.96 0.492 0.175 -0.505 2.66 -0.562 7.76 0.61 1531 -- --
42.27 0.303 11.3 -1.26 0.499 0.249 -0.0811 -- -0.663 8.22 38.06 12268 -- --
41.04 0.298 11.3 -0.948 0.49 0.225 -- 2.5 -0.567 7.8 0.5619 2965 -- --
41.84 0.301 11.3 -1.2 0.511 0.345 -- -- -0.761 8.19 42.66 18645 -- --
53.64 0.341 11.3 -0.897 -- 0.313 -- 2.66 -0.561 -- 0.42 2941 -- --
45.63 0.317 11.3 -1.28 0.498 -- -0.183 -- -0.632 7.82 -- -- -- --
45.71 0.317 11.3 -1.28 0.497 -- -- -- -0.632 7.91 -- -- -- --
55.23 0.346 11.3 -1.2 -- 0.328 -- -- -0.721 -- 36.33 13025 -- --
58.22 0.355 11.3 -- 0.442 0.874 -- -- -0.365 8.37 59.96 45930 -- --
59.17 0.359 11.3 -1.28 -- -- -- -- -0.625 -- -- -- -- --
89.04 0.441 11.3 -- 0.489 -- -- -- -0.489 8.1 -- -- -- --
71.1 0.393 11.3 -- -- 0.875 -- -- -0.363 -- 59.97 46048 -- --
102.17 0.472 11.3 -- -- -- -- -- -0.484 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 38.61 temperature 10.0 90 > th dose dependent rect. 7 16
4 39.16 temperature 30.0 90 < th dose dependent rect. 23 19
7 39.37 temperature 15.0 10 > th dose dependent rect. 7 17
9 39.40 radiation 40.0 90 < th dose dependent rect. 23 16
15 39.49 atmosphere 1000.0 30 > th dose independent rect. 23 19
19 39.58 temperature 30.0 270 < th dose independent rect. 22 17
24 39.62 atmosphere 1015.0 90 < th dose dependent rect. 18 17
25 39.62 radiation 40.0 270 < th dose dependent rect. 21 18
26 39.63 temperature 30.0 90 < th dose independent rect. 23 19
31 39.71 radiation 30.0 90 < th dose dependent rect. 23 14
32 39.71 radiation 40.0 90 < th dose dependent rect. 23 18
36 39.78 atmosphere 995.0 270 > th dose dependent rect. 11 16
42 39.80 temperature 25.0 90 > th dose dependent sin 8 NA
46 39.81 atmosphere 1015.0 90 < th dose dependent rect. 7 16
50 39.85 humidity 80.0 14400 > th dose independent rect. 20 1
51 39.86 atmosphere 1000.0 90 > th dose independent rect. 11 16
59 39.92 temperature 25.0 90 > th dose dependent rect. 19 16
63 39.94 temperature 30.0 90 < th dose independent rect. 11 7
68 39.96 atmosphere 1000.0 30 > th dose independent rect. 11 7
75 40.02 atmosphere 1000.0 270 > th dose independent rect. 22 17
80 40.03 atmosphere 1005.0 43200 < th dose dependent rect. 9 7
81 40.03 atmosphere 1005.0 43200 < th dose dependent rect. 8 9
85 40.03 temperature 15.0 30 > th dose dependent rect. 3 21
92 40.06 atmosphere 1005.0 43200 < th dose dependent rect. 11 4
94 40.07 precipitation 0.1 43200 > th dose independent rect. 17 2
96 40.07 atmosphere 995.0 90 > th dose dependent rect. 11 7
102 40.08 wind 1.0 14400 < th dose independent rect. 10 1
105 40.08 temperature 10.0 10 > th dose dependent rect. 3 23
107 40.09 radiation 10.0 90 < th dose independent rect. 23 18
118 40.10 wind 1.0 14400 > th dose independent rect. 10 1
119 40.10 atmosphere 1005.0 43200 < th dose dependent rect. 12 1
133 40.13 precipitation 0.1 43200 < th dose independent rect. 17 2
136 40.13 precipitation 0.1 43200 < th dose dependent rect. 17 2
150 40.15 atmosphere 1000.0 270 > th dose independent rect. 20 20
151 40.15 atmosphere 1005.0 43200 < th dose dependent rect. 14 1
169 40.17 radiation 40.0 10 < th dose dependent rect. 23 17
171 40.18 atmosphere 1015.0 90 < th dose independent rect. 18 17
181 40.19 atmosphere 1005.0 43200 < th dose dependent sin 0 NA
194 40.21 temperature 30.0 270 < th dose independent rect. 9 7
213 40.23 temperature 20.0 90 > th dose dependent rect. 18 20
220 40.25 temperature 30.0 270 < th dose independent rect. 10 5
265 40.29 temperature 25.0 90 > th dose dependent rect. 21 14
273 40.30 wind 9.0 14400 > th dose dependent rect. 13 1
284 40.30 atmosphere 995.0 90 > th dose dependent rect. 23 19
285 40.31 radiation 40.0 270 < th dose independent rect. 9 7
316 40.33 temperature 25.0 270 > th dose dependent rect. 17 18
347 40.36 humidity 80.0 14400 > th dose independent rect. 19 5
356 40.36 temperature 20.0 10 > th dose dependent rect. 16 22
357 40.37 wind 1.0 14400 > th dose independent rect. 21 2
358 40.37 wind 1.0 14400 > th dose independent rect. 17 6
403 40.40 radiation 40.0 270 < th dose independent rect. 22 17
421 40.41 wind 1.0 14400 < th dose independent rect. 17 7
451 40.43 radiation 10.0 90 < th dose independent rect. 23 16
455 40.43 precipitation 0.1 43200 > th dose dependent rect. 14 5
491 40.45 radiation 1.0 720 < th dose independent rect. 11 8
499 40.45 atmosphere 1015.0 270 < th dose dependent rect. 5 17
516 40.46 radiation 20.0 90 < th dose independent rect. 23 12
528 40.46 temperature 10.0 270 > th dose dependent rect. 15 22
535 40.47 temperature 25.0 720 > th dose independent sin 6 NA
536 40.47 temperature 25.0 720 > th dose independent rect. 5 5
539 40.47 wind 7.0 90 < th dose independent rect. 18 17
541 40.47 atmosphere 1005.0 43200 < th dose dependent no NA NA
557 40.48 atmosphere 1000.0 270 > th dose independent rect. 19 23
558 40.48 wind 1.0 14400 < th dose dependent rect. 10 1
569 40.49 atmosphere 1005.0 43200 < th dose dependent rect. 6 3
582 40.49 atmosphere 1005.0 43200 < th dose dependent rect. 14 23
586 40.50 precipitation 0.1 43200 > th dose dependent rect. 12 7
596 40.50 atmosphere 1005.0 43200 < th dose dependent rect. 12 23
601 40.51 radiation 10.0 90 < th dose independent rect. 23 14
624 40.52 humidity 80.0 14400 > th dose independent rect. 19 9
633 40.52 temperature 10.0 90 > th dose dependent rect. 18 17
658 40.54 humidity 80.0 14400 > th dose independent rect. 19 14
678 40.55 radiation 10.0 270 < th dose dependent rect. 20 11
688 40.56 wind 1.0 14400 < th dose independent rect. 20 4
690 40.56 radiation 1.0 270 > th dose dependent sin 11 NA
694 40.56 radiation 1.0 720 < th dose dependent rect. 11 8
704 40.57 wind 9.0 14400 > th dose independent rect. 13 1
725 40.58 precipitation 0.1 43200 > th dose dependent rect. 17 9
744 40.59 radiation 30.0 10 < th dose dependent rect. 23 15
761 40.60 atmosphere 1010.0 30 < th dose dependent rect. 18 5
762 40.60 radiation 1.0 1440 < th dose dependent rect. 17 10
765 40.60 atmosphere 995.0 10 > th dose dependent rect. 12 15
768 40.60 radiation 1.0 1440 < th dose dependent rect. 11 19
773 40.61 radiation 40.0 270 < th dose independent rect. 10 5
774 40.61 radiation 1.0 90 > th dose dependent sin 9 NA
776 40.61 radiation 1.0 1440 < th dose dependent rect. 17 4
778 40.61 radiation 1.0 1440 < th dose dependent rect. 17 7
794 40.62 temperature 25.0 720 > th dose independent rect. 23 11
796 40.62 radiation 1.0 1440 < th dose dependent rect. 17 2
831 40.64 precipitation 0.1 43200 > th dose dependent rect. 7 12
847 40.65 temperature 20.0 90 > th dose dependent rect. 3 8
874 40.66 atmosphere 995.0 270 > th dose dependent rect. 22 17
882 40.67 atmosphere 1000.0 270 > th dose independent rect. 9 7
884 40.67 temperature 25.0 90 > th dose dependent rect. 7 4
899 40.68 temperature 25.0 720 > th dose independent rect. 2 11
912 40.68 atmosphere 1015.0 270 < th dose dependent rect. 16 18
925 40.69 precipitation 0.1 43200 > th dose dependent rect. 17 6
983 40.72 temperature 25.0 4320 > th dose independent rect. 24 8
984 40.72 temperature 25.0 720 > th dose independent rect. 23 14
987 40.72 radiation 1.0 720 > th dose independent rect. 11 19
988 40.72 radiation 30.0 270 < th dose independent rect. 21 19
993 40.72 radiation 30.0 270 < th dose dependent sin 11 NA