BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0686900 Os03g0686900|Os03g0686900
(559 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G27070.1 | chr1:9396945-9399225 REVERSE LENGTH=533 208 5e-54
AT5G03420.1 | chr5:845641-848705 FORWARD LENGTH=599 68 1e-11
AT5G39790.1 | chr5:15932884-15935121 REVERSE LENGTH=274 60 4e-09
AT4G16360.3 | chr4:9245571-9246833 FORWARD LENGTH=262 54 3e-07
>AT1G27070.1 | chr1:9396945-9399225 REVERSE LENGTH=533
Length = 532
Score = 208 bits (530), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 123/279 (44%), Positives = 163/279 (58%), Gaps = 54/279 (19%)
Query: 276 SKSLTNDAWRTWSLDKGGFSD--FQAAEIHSTNSRKSFRHDGLDILAQDDVHGPS----N 329
S S T++ WRTWS+ + GF+D F+AAEI S+ GL + +DD S N
Sbjct: 284 SDSPTSETWRTWSMRRAGFTDEDFEAAEISSS---------GLTGVKKDDTKKDSGDSMN 334
Query: 330 G---VAVHDYDINDVDSERDDIHARLQNLELDLTAALHTLRSRFDKVISDMLQGIQIHET 386
G +A D+N + I RLQ L+ +L++ LH+LRS DKV+
Sbjct: 335 GKDRIASSSEDVN-----KTHIKHRLQQLQSELSSVLHSLRSPPDKVV------------ 377
Query: 387 LVDEVVLCASHLDLARGTSEGDGAKAPN--GLSDDWEFEETKVMQAQEELRSIRAKIAVL 444
TS+ A N LSDDWE++E +++ AQ +LRS RAK+AVL
Sbjct: 378 -----------------TSKDSETTAGNLENLSDDWEYKENEIIHAQNKLRSTRAKLAVL 420
Query: 445 EGKMALXXXXXXXXXXXXQRRLDEAEKALSELRTVYIVWSNPASEVLLTGSFDGWTSQRR 504
EGKMA+ QRR+D A +AL LRT IVW N ASEVLLTGSFDGW++QR+
Sbjct: 421 EGKMAMAIIDAQRIVREKQRRIDHASRALRLLRTASIVWPNSASEVLLTGSFDGWSTQRK 480
Query: 505 MERSERGTFSLNLRLYPGRYEIKFIVDGVWRNDPLRPLA 543
M+++E G FSL+L+LYPG+YEIKFIVDG W+ DPLRP+
Sbjct: 481 MKKAENGVFSLSLKLYPGKYEIKFIVDGQWKVDPLRPIV 519
>AT5G03420.1 | chr5:845641-848705 FORWARD LENGTH=599
Length = 598
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/124 (32%), Positives = 65/124 (52%), Gaps = 6/124 (4%)
Query: 423 EETKVMQAQEELRSIRAKIAVLEGKMALXXXXXXXXXXXXQRRLDEAEKALSELRTVYIV 482
+E ++ + +E++ + ++VL+ + + L EAE++LS L+ V I
Sbjct: 457 KELELSRLKEQIEKEKLSLSVLQRQAETEIQKAQMLISEKEVELQEAEESLSGLQEVVIE 516
Query: 483 WSNPASEVLLTGSFDGWTSQRRMERS------ERGTFSLNLRLYPGRYEIKFIVDGVWRN 536
+ + V +TGSF+GW + ME ++ +S L LYPG YEIKFIVDG W
Sbjct: 517 YCGDGNAVEVTGSFNGWQHRVGMELQASKSIGKQKCWSTLLWLYPGTYEIKFIVDGQWIT 576
Query: 537 DPLR 540
DP +
Sbjct: 577 DPQK 580
>AT5G39790.1 | chr5:15932884-15935121 REVERSE LENGTH=274
Length = 273
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 50/97 (51%), Gaps = 12/97 (12%)
Query: 465 RLDEAEKALSEL---------RTVYIVWSNPASEVLLTGSFDGWTSQRRM--ERSERGT- 512
RLD +K + E + V++ W A V + GSFDGW+ + + E S T
Sbjct: 170 RLDAVQKKMKEQIKGVEAAQSKEVHVFWIGMAESVQVMGSFDGWSQREDLSPEYSALFTK 229
Query: 513 FSLNLRLYPGRYEIKFIVDGVWRNDPLRPLANPSRME 549
FS L L PGRYE+KF+VDG W+ P P + ME
Sbjct: 230 FSTTLFLRPGRYEMKFLVDGEWQISPEFPTSGEGLME 266
>AT4G16360.3 | chr4:9245571-9246833 FORWARD LENGTH=262
Length = 261
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 481 IVWSNPASEVLLTGSFDGWTSQRRMERSERGTFSLNLRLYPGRYEIKFIVDGVWRNDPLR 540
I W + E+ + GS+D W ++ R++RS + F++ L G YE +FIVDG WR+ P
Sbjct: 78 ITWCHGGKEIAVEGSWDNWKTRSRLQRSGKD-FTIMKVLPSGVYEYRFIVDGQWRHAPEL 136
Query: 541 PLA 543
PLA
Sbjct: 137 PLA 139
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,122,486
Number of extensions: 349366
Number of successful extensions: 701
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 4
Length of query: 559
Length of database: 11,106,569
Length adjustment: 104
Effective length of query: 455
Effective length of database: 8,255,305
Effective search space: 3756163775
Effective search space used: 3756163775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 114 (48.5 bits)