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Os03g0684400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Mg2+ transporter protein, CorA-like family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.4 (0.021) R2 : 0.951
β1 : -- (--) R2dD : -- R2D : --
β2 : 6.3 (0.067) R2dC : 1.61 R2C : 0.18
β3 : 3.92 (0.0598) R2dE : 0.771 R2E : -0.665
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.204 (0.0441) R2dN8 : 0.00247 R2N8 : -0.00915
σ : 0.393
deviance : 71.35
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_____
C
peak time of C : 9.45
E
wheather : radiation
threshold : 3.67
memory length : 222
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.76
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.83 0.393 13.4 -0.126 6.37 4.27 1.29 0.48 0.152 9.7 6.381 264 7.93 --
69.2 0.387 13.4 -0.0964 6.46 4.26 0.798 -- 0.174 9.65 4.558 239 7.83 --
71.53 0.394 13.4 -0.0417 6.47 4.25 -- -0.238 0.229 9.65 4.592 242 7.84 --
71.8 0.395 13.4 -0.078 6.44 4.24 -- -- 0.166 9.66 4.713 235 7.73 --
135.63 0.542 13.7 -0.0185 -- 5.33 -- 1.29 -0.239 -- 26.16 861 6.33 --
136.04 0.547 13.5 -0.174 5.03 -- 1.31 -- 0.0393 6.74 -- -- -- --
140.39 0.555 13.5 -0.153 5.03 -- -- -- 0.0354 6.73 -- -- -- --
112.32 0.494 13.6 0.000423 -- 5.98 -- -- 0.156 -- 2.977 872 6.64 --
71.35 0.393 13.4 -- 6.3 3.92 -- -- 0.204 9.45 3.67 222 7.76 --
1463.41 1.79 13.6 -0.0385 -- -- -- -- 0.135 -- -- -- -- --
141.01 0.555 13.5 -- 5.03 -- -- -- 0.0525 6.73 -- -- -- --
111.31 0.491 13.6 -- -- 6.07 -- -- 0.182 -- 1.96 866 6.65 --
1463.45 1.79 13.6 -- -- -- -- -- 0.139 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 63.40 temperature 25.0 270 > th dose independent rect. 14 3
2 63.65 temperature 25.0 270 > th dose independent rect. 13 5
3 64.15 temperature 15.0 270 > th dose dependent rect. 13 6
9 65.95 temperature 15.0 270 > th dose dependent rect. 14 3
18 67.81 radiation 1.0 270 > th dose independent rect. 13 18
34 69.82 humidity 90.0 270 < th dose independent rect. 14 3
41 70.70 radiation 10.0 270 < th dose dependent sin 14 NA
47 71.21 humidity 90.0 270 < th dose independent rect. 13 5
59 72.20 radiation 1.0 270 > th dose independent rect. 14 3
64 72.52 temperature 15.0 10 > th dose dependent rect. 15 6
70 72.90 radiation 1.0 270 < th dose independent sin 14 NA
71 72.93 radiation 40.0 270 < th dose dependent sin 13 NA
74 73.01 radiation 1.0 270 > th dose independent sin 14 NA
76 73.17 radiation 1.0 270 > th dose independent rect. 13 5
98 73.55 radiation 1.0 270 > th dose dependent rect. 14 17
106 74.10 wind 9.0 270 < th dose independent rect. 13 19
114 74.36 temperature 10.0 270 > th dose independent rect. 8 5
115 74.36 atmosphere 995.0 270 > th dose independent rect. 8 5
116 74.36 atmosphere 1015.0 270 < th dose independent rect. 8 5
117 74.36 temperature 10.0 270 > th dose independent rect. 13 19
122 74.42 precipitation 0.1 270 < th dose independent rect. 8 5
123 74.42 precipitation 0.1 270 < th dose dependent rect. 8 5
126 74.73 radiation 1.0 270 > th dose dependent sin 13 NA
139 74.87 wind 1.0 270 > th dose independent rect. 8 5
145 75.18 precipitation 0.1 270 < th dose independent rect. 13 19
146 75.18 precipitation 0.1 270 < th dose dependent rect. 13 19
149 75.26 wind 9.0 270 < th dose independent rect. 8 5
154 75.43 wind 9.0 270 < th dose independent rect. 14 3
160 75.71 radiation 1.0 270 < th dose independent rect. 17 10
161 75.78 wind 1.0 270 > th dose independent rect. 14 3
162 75.78 wind 9.0 270 < th dose independent rect. 14 17
163 75.79 temperature 10.0 270 > th dose independent rect. 14 3
165 75.79 atmosphere 1010.0 270 < th dose independent rect. 14 3
167 75.79 temperature 10.0 270 > th dose independent rect. 17 21
169 75.84 radiation 1.0 270 < th dose independent rect. 15 12
172 75.93 radiation 10.0 270 < th dose dependent rect. 17 10
173 76.08 temperature 10.0 270 > th dose independent rect. 7 7
174 76.08 atmosphere 995.0 270 > th dose independent rect. 7 7
175 76.08 atmosphere 1015.0 270 < th dose independent rect. 7 7
176 76.08 temperature 10.0 270 > th dose independent rect. 14 17
177 76.11 precipitation 0.1 270 < th dose independent rect. 14 3
178 76.11 precipitation 0.1 270 < th dose dependent rect. 14 3
180 76.15 radiation 1.0 270 > th dose independent rect. 8 5
185 76.23 radiation 40.0 270 < th dose independent rect. 8 6
186 76.25 wind 9.0 270 < th dose independent rect. 13 5
196 76.43 humidity 50.0 270 > th dose independent rect. 8 5
198 76.44 temperature 10.0 270 > th dose dependent rect. 13 19
204 76.53 temperature 30.0 270 < th dose independent rect. 8 6
206 76.56 wind 1.0 270 > th dose independent rect. 13 5
210 76.64 temperature 10.0 90 > th dose dependent rect. 15 18
213 76.69 atmosphere 995.0 270 > th dose independent rect. 17 21
214 76.71 temperature 10.0 270 > th dose independent rect. 13 5
216 76.71 atmosphere 1010.0 270 < th dose independent rect. 13 5
218 76.71 precipitation 0.1 270 < th dose independent rect. 13 5
219 76.71 temperature 10.0 270 > th dose independent rect. 18 19
220 76.71 precipitation 0.1 270 < th dose dependent rect. 13 5
228 76.81 wind 9.0 270 < th dose independent rect. 3 15
229 76.85 precipitation 0.1 270 < th dose independent rect. 17 21
231 76.85 precipitation 0.1 270 < th dose dependent rect. 17 21
232 76.91 atmosphere 995.0 270 > th dose independent rect. 18 19
243 77.07 precipitation 0.1 270 < th dose independent rect. 18 19
244 77.07 precipitation 0.1 270 < th dose dependent rect. 18 19
248 77.13 radiation 1.0 270 < th dose independent rect. 9 18
253 77.22 wind 9.0 270 < th dose independent rect. 7 7
255 77.23 radiation 40.0 90 < th dose independent rect. 15 18
281 77.73 wind 9.0 270 < th dose independent rect. 17 21
287 77.86 wind 9.0 270 < th dose independent rect. 18 19
290 77.89 radiation 1.0 270 > th dose dependent rect. 14 4
294 77.93 temperature 30.0 270 < th dose independent rect. 18 20
310 78.02 temperature 10.0 270 > th dose independent rect. 18 9
311 78.02 humidity 50.0 270 > th dose independent rect. 18 9
312 78.02 radiation 20.0 270 < th dose independent rect. 18 9
315 78.02 temperature 10.0 270 > th dose independent rect. 3 15
316 78.02 atmosphere 1015.0 270 < th dose independent rect. 3 15
317 78.02 wind 9.0 270 < th dose independent rect. 12 21
320 78.08 wind 1.0 270 > th dose independent rect. 9 3
324 78.12 wind 9.0 270 < th dose independent rect. 18 9
333 78.28 radiation 10.0 270 < th dose dependent rect. 8 19
334 78.32 temperature 10.0 270 > th dose independent rect. 9 3
335 78.32 atmosphere 995.0 270 > th dose independent rect. 9 3
336 78.32 atmosphere 1015.0 270 < th dose independent rect. 9 3
338 78.32 temperature 10.0 270 > th dose independent rect. 12 21
341 78.38 precipitation 0.1 270 < th dose independent rect. 9 3
342 78.38 precipitation 0.1 270 < th dose dependent rect. 9 3
356 78.64 atmosphere 995.0 270 > th dose independent rect. 18 9
357 78.66 humidity 50.0 270 > th dose independent rect. 17 21
361 78.69 humidity 50.0 270 > th dose independent rect. 18 19
366 78.83 precipitation 0.1 270 < th dose independent rect. 3 15
367 78.83 precipitation 0.1 270 < th dose dependent rect. 3 15
414 79.13 wind 9.0 270 < th dose independent rect. 9 3
426 79.35 radiation 1.0 270 > th dose independent rect. 9 3
427 79.40 atmosphere 1015.0 270 < th dose dependent rect. 14 3
443 79.59 radiation 40.0 270 < th dose independent rect. 15 2
458 79.80 precipitation 0.1 270 < th dose independent rect. 12 21
459 79.80 precipitation 0.1 270 < th dose dependent rect. 12 21
463 79.84 temperature 30.0 270 < th dose independent rect. 19 18
473 80.01 precipitation 0.1 270 < th dose independent rect. 18 9
474 80.01 precipitation 0.1 270 < th dose dependent rect. 18 9
505 80.43 temperature 10.0 10 > th dose dependent rect. 15 19
506 80.45 wind 1.0 270 > th dose independent rect. 18 19
513 80.53 temperature 10.0 270 > th dose dependent rect. 3 15
517 80.58 humidity 50.0 270 > th dose independent rect. 9 3
520 80.65 temperature 30.0 270 < th dose independent rect. 18 9
525 80.77 wind 1.0 270 > th dose dependent rect. 14 3
570 81.32 atmosphere 995.0 10 > th dose independent rect. 10 6
623 81.74 atmosphere 995.0 270 > th dose independent rect. 13 19
690 82.15 temperature 20.0 10 > th dose independent rect. 15 5
695 82.19 atmosphere 1015.0 270 < th dose independent rect. 19 18
704 82.30 wind 1.0 270 > th dose independent rect. 18 9
728 82.44 atmosphere 995.0 270 > th dose independent rect. 14 3
742 82.64 temperature 10.0 270 > th dose independent rect. 23 9
743 82.64 temperature 30.0 270 < th dose independent rect. 23 9
744 82.64 humidity 50.0 270 > th dose independent rect. 23 9
746 82.64 atmosphere 995.0 270 > th dose independent rect. 23 9
747 82.64 temperature 10.0 270 > th dose independent rect. 8 15
749 82.66 wind 9.0 270 < th dose independent rect. 23 9
756 82.69 radiation 40.0 270 < th dose independent rect. 19 19
758 82.71 atmosphere 1015.0 270 < th dose dependent rect. 13 5
761 82.74 atmosphere 995.0 270 > th dose independent rect. 13 5
769 82.81 humidity 90.0 270 < th dose dependent rect. 14 3
783 82.95 radiation 40.0 270 < th dose independent rect. 23 9
792 83.02 atmosphere 995.0 90 > th dose independent rect. 15 18
821 83.21 wind 1.0 270 > th dose dependent rect. 13 5
825 83.23 radiation 40.0 90 < th dose independent rect. 14 6
832 83.31 temperature 30.0 270 < th dose independent rect. 8 17
837 83.34 precipitation 0.1 270 < th dose independent rect. 23 9
839 83.34 precipitation 0.1 270 < th dose dependent rect. 23 9
843 83.39 temperature 10.0 10 > th dose independent rect. 10 5
846 83.39 atmosphere 1015.0 10 < th dose independent rect. 10 5
847 83.39 precipitation 0.1 10 < th dose independent rect. 10 5
848 83.39 temperature 10.0 10 > th dose independent rect. 15 19
849 83.39 precipitation 0.1 10 < th dose dependent rect. 10 5
867 83.49 wind 9.0 10 < th dose independent rect. 15 19
952 83.96 radiation 1.0 10 > th dose independent rect. 10 5