BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0684400 Os03g0684400|AK100086
(474 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G22830.1 | chr5:7627676-7630633 FORWARD LENGTH=460 462 e-130
AT3G19640.1 | chr3:6820969-6823104 FORWARD LENGTH=485 65 8e-11
AT5G09690.2 | chr5:3000990-3003415 REVERSE LENGTH=398 63 3e-10
AT3G58970.1 | chr3:21789659-21791163 REVERSE LENGTH=437 56 4e-08
AT2G03620.1 | chr2:1100489-1102168 REVERSE LENGTH=422 52 7e-07
>AT5G22830.1 | chr5:7627676-7630633 FORWARD LENGTH=460
Length = 459
Score = 462 bits (1188), Expect = e-130, Method: Compositional matrix adjust.
Identities = 231/337 (68%), Positives = 268/337 (79%)
Query: 138 LGIREPVYEVIEVKSNGRMSTKKISRRQLLKSSGLRLRDTRSVDPSLWLMNSMPSLLVRE 197
LGIREPVYEV+EVK+ G +ST+KI+RRQLLKSSGLR RD RSVDPSL++ NS+PSLLVRE
Sbjct: 123 LGIREPVYEVVEVKATGAISTRKINRRQLLKSSGLRPRDIRSVDPSLFMTNSVPSLLVRE 182
Query: 198 QAILVNLGSLRAIAMHERVLIFNYNSPGGKAFLDSLLPRLNPRNINGGPAMPFQLEVVEA 257
AIL+NLGSLRAIAM +RVLIF+YN GG+AF+D+L+PRLNPR++NGGP+MPF+LE VE+
Sbjct: 183 HAILLNLGSLRAIAMRDRVLIFDYNRRGGRAFVDTLMPRLNPRSMNGGPSMPFELEAVES 242
Query: 258 ALLSRIQRLERRLMRIEPRVGALLEVLPNRLTADVLEQLRLSKQALVELGSRAGDLKQML 317
AL+SRIQRLE+RLM IEPRV ALLEVLPNRLTAD+LE+LR+SKQ LVELGSRAG L+QML
Sbjct: 243 ALISRIQRLEQRLMDIEPRVQALLEVLPNRLTADILEELRISKQRLVELGSRAGALRQML 302
Query: 318 IDLLDDPHEIRRICIMGRNCTLDKLSDNMECSVPLEKQIAXXXXXXXXXXXXNYLQRCES 377
+DLL+DPHEIRRICIMGRNCTL + D++EC++P +K IA NYLQRCES
Sbjct: 303 LDLLEDPHEIRRICIMGRNCTLRRGDDDLECTLPSDKLIAEEEEEEIEMLLENYLQRCES 362
Query: 378 IHGQAERLLDSAREMEDSIAVNXXXXXXXXXXXXXXXQVGTFCVAIGALIAGIFGMNLKS 437
HGQAERLLDSA+EMEDSIAVN QVGTFCVA+GALIAGIFGMNL+S
Sbjct: 363 CHGQAERLLDSAKEMEDSIAVNLSSRRLEVSRFELLLQVGTFCVAVGALIAGIFGMNLRS 422
Query: 438 YLETNAWAFWXXXXXXXXXXXXXXXXMYSYLKTRKIL 474
YLE A AFW MYSYL RKI
Sbjct: 423 YLEEQASAFWLTTGGIIIGAAVAFFLMYSYLSRRKIF 459
>AT3G19640.1 | chr3:6820969-6823104 FORWARD LENGTH=485
Length = 484
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 110/261 (42%), Gaps = 64/261 (24%)
Query: 150 VKSNGRMSTKKISRRQLLKSSGLRLRDTRSVDPSLWLMNSMPS-LLVREQAILVNLGSLR 208
+ S+G+ K+ + +++ +GL RD R +DP L S PS +L RE+AI++NL ++
Sbjct: 50 LNSSGQSEPKEEGKHSIMRRTGLPARDLRILDPLL----SYPSTVLGRERAIVINLEHIK 105
Query: 209 AIAMHERVLIFNYNSPGGKAFLDSL-----------------------LPRLNP------ 239
AI + VL+ N P F+D L R++P
Sbjct: 106 AIITAQEVLLLNSKDPSVSPFIDELQRRILCHHHATKPQEEQNSGGEPHTRVDPAQGEAG 165
Query: 240 --------------------RNINGGPAMPFQLEVVEAALLSRIQRLERRLMRIEPRVGA 279
N +G +PF+ +EA L + LE +R+E
Sbjct: 166 TEQSSGDQGSEAKKDAKQSLENQDGSKVLPFEFVALEACLEAASSSLEHEALRLELEAHP 225
Query: 280 LLEVLPNRLTADVLEQLRLSKQALVELGSRAGDLKQMLIDLLDDPHEIRRICIMGR---- 335
L+ L ++++ LE++R K LV + R ++ L LLDD ++ + + +
Sbjct: 226 ALDKLTSKISTLNLERVRQIKSRLVAITGRVQKVRDELEHLLDDDEDMAEMYLTEKLAQK 285
Query: 336 -----NCTLDKLSDNMECSVP 351
N ++++ SD E +P
Sbjct: 286 LEDSSNSSMNE-SDTFEVDLP 305
>AT5G09690.2 | chr5:3000990-3003415 REVERSE LENGTH=398
Length = 397
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 129/328 (39%), Gaps = 40/328 (12%)
Query: 148 IEVKSNGRMSTKKISRRQLLKSSGLRLRDTRSVDPSLWLMNSMPS-LLVREQAILVNLGS 206
I + + G+ + + + ++ + RD R +DP+L+ PS +L RE+AI++NL
Sbjct: 41 ISIDATGQKTVLDVDKHVIMHRVQIHARDLRILDPNLF----YPSAILGRERAIVLNLEH 96
Query: 207 LRAIAMHERVLIFNYNSPGGKAFLDSLLPRLNPRN----INGGPAM------PFQLEVVE 256
++AI E VLI + + L+ RL N ++G + PF+ +E
Sbjct: 97 IKAIITAEEVLIRDSSDENVIPVLEEFQRRLPVGNEAHGVHGDGDLGEEDESPFEFRALE 156
Query: 257 AALLSRIQRLERRLMRIEPRVGALLEVLPNRLTADVLEQLRLSKQALVELGSRAGDLKQM 316
AL + L R +E L+ L ++++ LE++R K A+ L +R ++
Sbjct: 157 VALEAICSFLAARTTELEKFAYPALDELTLKISSRNLERVRKLKSAMTRLTARVQKVRDE 216
Query: 317 LIDLLDDPHEIRRICIMGR--NCTLDKLSDNMECSVPLEKQIAXXXXXXXXXXXXN---- 370
L LLDD ++ + + + + + P I
Sbjct: 217 LEQLLDDDGDMADLYLTRKLVGASSSVSVSDEPIWYPTSPTIGSMISRASRVSLVTVRGD 276
Query: 371 --------------YLQRCESIHGQAERLLDSAREMEDSIAVNXXXXXXXXXXXXXXXQV 416
Y + +S + L + + ED I +
Sbjct: 277 DETDVEELEMLLEAYFMQIDSTLNKLTELREYIDDTEDYINIQLDNHRNQLIQLELMLSA 336
Query: 417 GTFCVAIGALIAGIFGMNLKSYLETNAW 444
GT CV++ ++IAGIFGMN+ N W
Sbjct: 337 GTVCVSVYSMIAGIFGMNIP-----NTW 359
>AT3G58970.1 | chr3:21789659-21791163 REVERSE LENGTH=437
Length = 436
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 64/329 (19%), Positives = 125/329 (37%), Gaps = 50/329 (15%)
Query: 153 NGRMSTKKISRRQLLKSSGLRLRDTRSVDPSLWLMNSMPSLLVREQAILVNLGSLRAIAM 212
G M + + ++K + + RD R + P + + ++L RE+AI+VNL ++AI
Sbjct: 71 TGAMEVVECDKSTIIKRASVPARDLRILGP---VFSHSSNILAREKAIVVNLEVIKAIVT 127
Query: 213 HERVLIFNYNSPGGKAFLDSLLPRLNPRNINGG---------------------PAMPFQ 251
E VL+ + P F++ L + RN N +PF+
Sbjct: 128 AEEVLLLDPLRPEVLPFVERLKQQFPQRNGNENALQASANVQSPLDPEAAEGLQSELPFE 187
Query: 252 LEVVEAALLSRIQRLERRLMRIEPRVGALLEVLPNRLTADVLEQLRLSKQALVELGSRAG 311
+V+E AL +++ + +E +L+ L ++ + LE +R K L L +R
Sbjct: 188 FQVLEIALEVVCSFVDKSVAALETEAWPVLDELTKNVSTENLEYVRSLKSNLTRLLARVQ 247
Query: 312 DLKQMLIDLLDDPHEI------------------------RRICIMGRNCT-LDKLSDNM 346
++ L LLDD ++ I + N + L +L+ N
Sbjct: 248 KVRDELEHLLDDNEDMADLYLTRKWIQNQQTEAILAGTASNSIALPAHNTSNLHRLTSNR 307
Query: 347 ECSVPLEKQIAXXXXXXXXXXXXNYLQRCESIHGQAERLLDSAREMEDSIAVNXXXXXXX 406
S+ + Y + + + + + + + ED + +
Sbjct: 308 SASM-VTSNTEEDDVEDLEMLLEAYFMQLDGMRNKILTVREYIDDTEDYVNIQLDNQRNE 366
Query: 407 XXXXXXXXQVGTFCVAIGALIAGIFGMNL 435
+ +F +A L+A +FGMN+
Sbjct: 367 LIQLQLTLTIASFAIAAETLLASLFGMNI 395
>AT2G03620.1 | chr2:1100489-1102168 REVERSE LENGTH=422
Length = 421
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 80/164 (48%), Gaps = 4/164 (2%)
Query: 148 IEVKSNGRMSTKKISRRQLLKSSGLRLRDTRSVDPSLWLMNSMPSLLVREQAILVNLGSL 207
+++ +G + ++ + ++K L RD R +DP L++ S S+L RE+AI+V+L +
Sbjct: 52 VKIDQDGNSAVLELDKATIMKRCSLPSRDLRLLDP-LFIYPS--SILGRERAIVVSLEKI 108
Query: 208 RAIAMHERVLIFNYNSPGGKAFLDSLLPRLNP-RNINGGPAMPFQLEVVEAALLSRIQRL 266
R I E V++ N + L RL N+N +PF+ + +E L L
Sbjct: 109 RCIITAEEVILMNARDASVVQYQSELCKRLQSNHNLNVKDDLPFEFKALELVLELSCLSL 168
Query: 267 ERRLMRIEPRVGALLEVLPNRLTADVLEQLRLSKQALVELGSRA 310
+ ++ +E V +L+ L ++ LE +R K L+ L +
Sbjct: 169 DAQVNELEMEVYPVLDELATNISTLNLEHVRRLKGRLLTLTQKV 212
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.387
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,021,319
Number of extensions: 242189
Number of successful extensions: 595
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 594
Number of HSP's successfully gapped: 7
Length of query: 474
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 372
Effective length of database: 8,310,137
Effective search space: 3091370964
Effective search space used: 3091370964
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)