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Os03g0681700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Yarrowia lipolytica chromosome E of strain CLIB99 of Yarrowia lipolytica.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.8 (0.0147) R2 : 0.111
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.233 (0.0309) R2dN8 : 0.144 R2N8 : 0.111
σ : 0.276
deviance : 35
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
30.14 0.258 10.8 -0.164 0.0139 -0.0192 -0.779 -2.88 -0.278 0.571 26.72 119 -- --
30.96 0.261 10.8 0.0915 0.0211 -0.468 0.661 -- -0.241 11 29.57 35 -- --
32.08 0.266 10.8 -0.0707 0.0739 0.0185 -- -3.23 -0.257 5.46 28.48 89 -- --
32.4 0.265 10.8 0.119 0.0618 -0.43 -- -- -0.244 5.87 29.61 35 -- --
32.12 0.264 10.8 -0.0811 -- -0.0125 -- -3.22 -0.256 -- 28.42 89 -- --
33.09 0.27 10.8 0.0667 0.0113 -- 0.645 -- -0.225 10.3 -- -- -- --
34.03 0.273 10.8 0.0878 0.118 -- -- -- -0.226 4.84 -- -- -- --
32.59 0.266 10.8 0.12 -- -0.459 -- -- -0.243 -- 29.5 37 -- --
32.74 0.266 10.8 -- 0.0698 -0.408 -- -- -0.254 5.55 29.7 35 -- --
34.78 0.276 10.8 0.0922 -- -- -- -- -0.223 -- -- -- -- --
34.24 0.274 10.8 -- 0.12 -- -- -- -0.236 4.82 -- -- -- --
32.97 0.267 10.8 -- -- -0.442 -- -- -0.255 -- 29.53 37 -- --
35 0.276 10.8 -- -- -- -- -- -0.233 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 28.72 temperature 30.0 30 < th dose independent rect. 12 23
2 28.82 temperature 30.0 90 < th dose independent rect. 5 12
4 28.88 radiation 30.0 10 < th dose independent rect. 6 5
5 28.98 radiation 40.0 10 > th dose independent rect. 13 23
8 29.09 temperature 30.0 270 < th dose independent rect. 3 12
11 29.19 humidity 60.0 90 > th dose independent rect. 5 10
13 29.25 wind 1.0 10 > th dose independent rect. 12 23
15 29.26 humidity 60.0 270 > th dose independent rect. 3 12
16 29.26 radiation 30.0 10 > th dose dependent rect. 13 23
17 29.28 humidity 60.0 10 > th dose independent rect. 12 23
19 29.31 temperature 30.0 10 < th dose independent rect. 6 5
21 29.31 temperature 15.0 30 > th dose independent rect. 12 23
22 29.31 temperature 25.0 270 > th dose dependent rect. 6 9
24 29.32 temperature 25.0 270 > th dose dependent sin 4 NA
27 29.33 temperature 15.0 1440 > th dose independent rect. 6 6
33 29.37 temperature 15.0 720 > th dose independent rect. 12 12
44 29.44 temperature 25.0 270 < th dose independent rect. 17 14
52 29.49 wind 1.0 10 > th dose independent rect. 1 10
53 29.50 radiation 30.0 720 < th dose independent rect. 3 6
58 29.53 radiation 1.0 30 > th dose dependent rect. 11 1
63 29.54 temperature 15.0 720 > th dose independent rect. 12 14
72 29.60 radiation 10.0 720 < th dose independent rect. 21 10
74 29.61 humidity 60.0 10 > th dose independent rect. 6 5
77 29.62 radiation 40.0 720 > th dose dependent rect. 11 1
78 29.62 wind 7.0 30 < th dose dependent rect. 6 5
79 29.63 wind 5.0 30 < th dose independent rect. 6 5
80 29.63 wind 3.0 720 < th dose dependent rect. 2 3
81 29.64 temperature 15.0 720 > th dose independent rect. 12 10
94 29.69 temperature 15.0 720 > th dose independent rect. 14 10
96 29.70 temperature 30.0 270 < th dose independent sin 7 NA
98 29.70 humidity 60.0 10 > th dose independent rect. 6 9
100 29.71 wind 3.0 720 < th dose independent rect. 2 1
103 29.71 humidity 60.0 10 > th dose independent rect. 6 11
105 29.71 atmosphere 1015.0 30 < th dose dependent rect. 19 16
107 29.72 temperature 25.0 720 < th dose independent rect. 5 5
112 29.73 temperature 15.0 720 > th dose independent rect. 10 14
113 29.73 radiation 10.0 720 > th dose dependent rect. 11 1
120 29.74 temperature 25.0 720 < th dose independent rect. 23 1
122 29.74 temperature 30.0 30 < th dose independent rect. 14 21
127 29.74 temperature 25.0 720 < th dose dependent rect. 3 13
129 29.75 temperature 25.0 720 > th dose independent rect. 6 1
131 29.75 radiation 40.0 720 > th dose dependent rect. 8 4
154 29.77 radiation 30.0 720 < th dose independent rect. 19 14
155 29.77 temperature 25.0 720 > th dose dependent rect. 6 3
161 29.77 atmosphere 1015.0 30 < th dose dependent rect. 19 14
166 29.79 humidity 60.0 270 < th dose independent rect. 11 2
169 29.79 radiation 20.0 10 > th dose dependent rect. 9 3
180 29.81 wind 1.0 10 > th dose independent rect. 19 16
202 29.82 wind 1.0 10 > th dose independent rect. 14 21
217 29.84 atmosphere 995.0 1440 > th dose independent rect. 6 6
218 29.84 radiation 30.0 720 < th dose independent rect. 1 8
220 29.84 radiation 20.0 720 < th dose independent rect. 21 12
221 29.84 temperature 10.0 1440 > th dose independent rect. 12 18
225 29.84 radiation 40.0 10 < th dose dependent rect. 6 5
226 29.84 temperature 30.0 720 < th dose dependent rect. 5 9
233 29.85 radiation 10.0 720 < th dose dependent rect. 5 2
234 29.85 humidity 50.0 10 > th dose dependent rect. 6 5
239 29.86 radiation 20.0 30 > th dose independent rect. 11 1
240 29.86 humidity 90.0 720 < th dose independent rect. 12 3
242 29.86 temperature 30.0 720 < th dose dependent rect. 5 5
277 29.89 radiation 40.0 10 < th dose independent rect. 6 9
282 29.89 temperature 10.0 30 > th dose dependent rect. 11 19
284 29.90 radiation 20.0 720 < th dose independent rect. 23 9
293 29.91 temperature 30.0 90 < th dose independent sin 1 NA
294 29.91 radiation 10.0 720 < th dose independent rect. 5 2
296 29.91 radiation 40.0 10 > th dose independent rect. 9 3
318 29.91 atmosphere 1010.0 30 < th dose independent rect. 12 23
319 29.91 wind 9.0 4320 > th dose dependent rect. 13 1
320 29.91 temperature 15.0 720 > th dose dependent rect. 3 11
324 29.92 temperature 30.0 270 > th dose independent sin 5 NA
354 29.93 radiation 30.0 270 < th dose independent rect. 3 8
364 29.94 temperature 30.0 90 > th dose independent sin 2 NA
369 29.94 temperature 15.0 1440 > th dose independent rect. 6 8
380 29.94 temperature 15.0 30 > th dose independent rect. 19 16
384 29.94 wind 9.0 30 < th dose independent rect. 11 19
396 29.95 temperature 10.0 30 > th dose dependent rect. 6 5
402 29.96 radiation 40.0 720 > th dose independent rect. 11 1
417 29.96 radiation 20.0 720 < th dose dependent rect. 21 10
422 29.97 temperature 25.0 720 > th dose independent rect. 6 3
424 29.97 temperature 15.0 1440 > th dose independent rect. 12 8
426 29.97 temperature 25.0 720 < th dose independent rect. 17 9
428 29.97 humidity 60.0 30 > th dose independent rect. 23 23
430 29.97 temperature 25.0 720 > th dose dependent rect. 8 1
467 29.99 wind 1.0 10 > th dose independent rect. 6 5
468 29.99 temperature 10.0 30 > th dose independent rect. 6 5
474 29.99 atmosphere 995.0 30 > th dose independent rect. 6 5
476 29.99 atmosphere 1015.0 30 < th dose independent rect. 6 5
477 29.99 precipitation 0.1 30 < th dose independent rect. 6 5
478 29.99 temperature 30.0 270 > th dose independent rect. 8 7
493 29.99 temperature 10.0 30 > th dose independent rect. 11 19
499 29.99 temperature 15.0 30 > th dose independent rect. 14 21
502 29.99 precipitation 0.1 30 < th dose dependent rect. 6 5
550 30.01 temperature 20.0 720 > th dose independent rect. 12 1
554 30.01 precipitation 0.1 10 < th dose independent rect. 11 19
558 30.01 atmosphere 995.0 30 > th dose dependent rect. 6 5
571 30.01 precipitation 0.1 10 < th dose dependent rect. 11 19
586 30.03 temperature 30.0 720 < th dose dependent rect. 7 2
639 30.05 humidity 70.0 270 < th dose dependent rect. 11 2
647 30.05 atmosphere 1010.0 270 < th dose dependent rect. 8 9
648 30.05 wind 3.0 720 < th dose dependent rect. 24 12
655 30.05 atmosphere 995.0 30 > th dose dependent rect. 11 19
657 30.06 humidity 60.0 90 > th dose independent sin 2 NA
662 30.06 temperature 15.0 720 > th dose independent rect. 12 5
664 30.06 temperature 15.0 30 > th dose independent rect. 21 14
665 30.06 temperature 25.0 720 < th dose dependent sin 3 NA
678 30.07 humidity 60.0 270 > th dose independent sin 5 NA
685 30.07 humidity 70.0 43200 < th dose dependent rect. 4 3
695 30.08 wind 1.0 720 > th dose independent rect. 3 6
718 30.09 radiation 1.0 10 > th dose independent rect. 6 5
728 30.09 temperature 15.0 1440 > th dose independent rect. 6 10
759 30.09 atmosphere 995.0 90 > th dose dependent rect. 16 13
775 30.10 humidity 60.0 43200 > th dose independent rect. 4 3
794 30.10 temperature 15.0 720 > th dose independent rect. 12 23
795 30.10 humidity 60.0 30 > th dose independent rect. 3 23
806 30.10 temperature 25.0 270 > th dose dependent rect. 20 9
819 30.11 radiation 40.0 720 > th dose dependent sin 10 NA
834 30.12 temperature 15.0 720 > th dose independent rect. 23 1
838 30.12 humidity 80.0 270 > th dose independent rect. 19 9
839 30.12 humidity 90.0 30 < th dose independent rect. 1 10
842 30.12 atmosphere 1010.0 30 < th dose independent rect. 19 16
844 30.12 humidity 60.0 30 > th dose independent rect. 1 23
852 30.13 wind 9.0 4320 > th dose independent rect. 15 1
861 30.13 radiation 30.0 270 < th dose independent rect. 3 10
891 30.14 radiation 40.0 720 < th dose dependent rect. 3 6
962 30.16 wind 1.0 10 > th dose independent rect. 21 14
976 30.17 precipitation 0.1 720 < th dose independent sin 21 NA
986 30.17 precipitation 0.1 720 < th dose dependent sin 21 NA