FiT-DB / Search/ Help/ Sample detail
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Os03g0681400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Ubiquitin-conjugating enzyme E2-18 kDa (EC 6.3.2.19) (Ubiquitin- conjugating enzyme 15) (Ubiquitin-protein ligase) (Ubiquitin carrier protein) (PM42).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.46 | 0.324 | 10 | 0.0609 | 0.559 | 0.192 | 0.558 | 4.17 | -0.116 | 9.31 | 30 | 816 | -- | -- |
| 49.53 | 0.328 | 10.1 | -0.27 | 0.544 | 0.689 | 0.499 | -- | -0.127 | 9.11 | 30.3 | 624 | -- | -- |
| 48.37 | 0.324 | 10 | 0.133 | 0.542 | 0.137 | -- | 4.08 | -0.106 | 9.47 | 30 | 897 | -- | -- |
| 48.9 | 0.326 | 10.1 | -0.428 | 0.563 | 0.634 | -- | -- | -0.129 | 9.17 | 30.4 | 813 | -- | -- |
| 60.24 | 0.361 | 10 | 0.274 | -- | -0.0419 | -- | 4.16 | -0.123 | -- | 30.9 | 2799 | -- | -- |
| 59.28 | 0.361 | 10.1 | -0.323 | 0.42 | -- | 0.219 | -- | -0.21 | 9.62 | -- | -- | -- | -- |
| 59.46 | 0.361 | 10.1 | -0.315 | 0.42 | -- | -- | -- | -0.21 | 9.54 | -- | -- | -- | -- |
| 58.76 | 0.357 | 10.1 | -0.523 | -- | 0.583 | -- | -- | -0.261 | -- | 27.83 | 4624 | -- | -- |
| 53.43 | 0.34 | 10.1 | -- | 0.561 | 0.631 | -- | -- | -0.107 | 8.91 | 30.5 | 659 | -- | -- |
| 69.84 | 0.39 | 10.1 | -0.318 | -- | -- | -- | -- | -0.209 | -- | -- | -- | -- | -- |
| 62.08 | 0.369 | 10.1 | -- | 0.42 | -- | -- | -- | -0.175 | 9.59 | -- | -- | -- | -- |
| 64.78 | 0.375 | 10.1 | -- | -- | 0.452 | -- | -- | -0.191 | -- | 28.55 | 4625 | -- | -- |
| 72.51 | 0.397 | 10.1 | -- | -- | -- | -- | -- | -0.173 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.93 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 2 | 46.05 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 3 | 46.17 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 4 | 46.41 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 8 | 46.49 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 10 | 46.60 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 2 |
| 14 | 46.67 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 1 | 15 |
| 16 | 46.69 | temperature | 30.0 | 4320 | > th | dose independent | rect. | 14 | 2 |
| 23 | 46.74 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 35 | 46.84 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 45 | 46.92 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 48 | 46.93 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 56 | 46.97 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 57 | 46.98 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 58 | 46.98 | temperature | 10.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 60 | 46.98 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 10 |
| 72 | 47.02 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 89 | 47.07 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 1 | 9 |
| 94 | 47.10 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 112 | 47.19 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 23 | 12 |
| 130 | 47.27 | temperature | 30.0 | 720 | < th | dose independent | rect. | 15 | 21 |
| 138 | 47.30 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 19 |
| 139 | 47.30 | temperature | 30.0 | 720 | < th | dose dependent | sin | 6 | NA |
| 155 | 47.33 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 167 | 47.36 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 12 |
| 180 | 47.40 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 22 |
| 199 | 47.46 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 208 | 47.49 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 221 | 47.52 | temperature | 30.0 | 720 | > th | dose independent | rect. | 10 | 8 |
| 231 | 47.54 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 297 | 47.65 | temperature | 30.0 | 720 | > th | dose independent | sin | 21 | NA |
| 323 | 47.69 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 19 | 2 |
| 325 | 47.69 | temperature | 30.0 | 720 | > th | dose independent | rect. | 14 | 23 |
| 327 | 47.69 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 19 | 2 |
| 337 | 47.70 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 16 |
| 338 | 47.70 | temperature | 30.0 | 720 | > th | dose independent | rect. | 10 | 23 |
| 356 | 47.71 | temperature | 30.0 | 720 | < th | dose independent | rect. | 22 | 21 |
| 359 | 47.71 | temperature | 30.0 | 720 | > th | dose independent | rect. | 12 | 23 |
| 363 | 47.72 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 19 | 2 |
| 368 | 47.73 | temperature | 30.0 | 720 | > th | dose independent | no | NA | NA |
| 505 | 47.76 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 12 | 7 |
| 512 | 47.77 | temperature | 30.0 | 720 | < th | dose independent | sin | 21 | NA |
| 520 | 47.78 | humidity | 90.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 578 | 47.85 | temperature | 30.0 | 4320 | < th | dose independent | rect. | 14 | 15 |
| 622 | 47.88 | temperature | 30.0 | 720 | < th | dose independent | no | NA | NA |
| 651 | 47.90 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 653 | 47.90 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 8 |
| 656 | 47.90 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 661 | 47.91 | temperature | 30.0 | 720 | > th | dose independent | rect. | 15 | 2 |
| 745 | 47.99 | temperature | 30.0 | 720 | < th | dose independent | rect. | 3 | 23 |
| 746 | 47.99 | temperature | 30.0 | 720 | < th | dose independent | rect. | 11 | 23 |
| 766 | 48.01 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 8 | 12 |
| 806 | 48.06 | temperature | 30.0 | 720 | < th | dose independent | rect. | 24 | 23 |
| 817 | 48.08 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 844 | 48.09 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 1 | 8 |
| 857 | 48.10 | temperature | 30.0 | 720 | > th | dose dependent | rect. | 10 | 7 |
| 876 | 48.12 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 12 |
| 953 | 48.19 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 2 |
| 957 | 48.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 963 | 48.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
