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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0665700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF1677, plant family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.23 (0.0744) R2 : 0.739
β1 : -4.75 (0.447) R2dD : 0.319 R2D : -0.0909
β2 : 4.52 (0.14) R2dC : 0.613 R2C : 0.503
β3 : 3.26 (0.236) R2dE : 0.22 R2E : -0.065
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -8.12 (1.64) R2dD*E : 0.072 R2D*E : -0.212
γ1 : -1.34 (0.157) R2dN8 : 0.095 R2N8 : -0.0411
σ : 1.05
deviance : 503.94
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_____
C
peak time of C : 9.01
E
wheather : temperature
threshold : 24.7
memory length : 1193
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.1
open length of G : 15.1

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
500.17 1.05 6.23 -4.77 4.52 3.28 -1.09 -8.38 -1.35 9.02 24.6 1187 11.2 14.7
536.64 1.08 6.01 -2.75 4.79 2.49 -0.81 -- -0.924 8.45 24.34 1693 13 12.7
503.94 1.05 6.23 -4.75 4.52 3.26 -- -8.12 -1.34 9.01 24.7 1193 11.1 15.1
530.61 1.07 6.02 -2.85 4.41 2.55 -- -- -0.916 8.98 24.1 1199 11 16.6
1101.54 1.55 6.17 -5.36 -- 3.7 -- -10 -2.06 -- 15.66 873 0.0499 4.23
727.25 1.26 5.93 -2.02 4.4 -- -1.06 -- -0.569 8.44 -- -- -- --
730.83 1.27 5.93 -2.05 4.4 -- -- -- -0.568 8.45 -- -- -- --
696.8 1.23 6.11 -2.8 -- 4.33 -- -- -0.858 -- -23.25 2087 0.836 3.8
718.51 1.25 5.9 -- 4.49 1.95 -- -- -0.43 8.98 24.93 1072 13.1 15.7
1813.76 1.99 6.04 -2.03 -- -- -- -- -0.525 -- -- -- -- --
841.95 1.36 5.88 -- 4.4 -- -- -- -0.339 8.49 -- -- -- --
835.36 1.35 6.03 -- -- 4.54 -- -- -0.655 -- -26.43 2115 0.0382 5.3
1922.68 2.05 5.99 -- -- -- -- -- -0.299 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 519.89 temperature 25 1440 > th dose dependent rect. 11 14
5 520.17 temperature 25 1440 > th dose dependent rect. 11 20
18 520.74 temperature 25 1440 > th dose dependent rect. 13 4
41 522.25 temperature 25 1440 > th dose dependent sin 16 NA
160 529.99 temperature 25 1440 > th dose dependent rect. 5 20
174 530.12 temperature 25 1440 > th dose dependent rect. 20 23
180 530.21 temperature 25 1440 > th dose dependent no NA NA
353 541.85 temperature 25 1440 > th dose dependent rect. 20 3
380 544.74 temperature 25 1440 > th dose dependent rect. 21 1
445 552.46 temperature 25 1440 > th dose independent rect. 17 7
458 553.35 temperature 25 1440 > th dose independent rect. 19 5
472 553.84 temperature 30 1440 < th dose independent rect. 13 2
474 554.00 temperature 25 4320 < th dose independent rect. 6 6
494 554.74 temperature 25 4320 > th dose independent rect. 5 8
518 555.68 temperature 25 1440 < th dose independent rect. 17 8
546 556.39 temperature 30 1440 > th dose independent rect. 13 2
599 557.62 temperature 25 1440 < th dose independent rect. 19 5
715 560.09 temperature 25 1440 > th dose independent sin 15 NA
741 560.49 temperature 30 1440 < th dose independent rect. 13 14
746 560.54 temperature 30 1440 < th dose independent rect. 13 16
750 560.57 temperature 30 1440 < th dose independent rect. 13 18
754 560.59 temperature 30 1440 < th dose independent rect. 13 9
756 560.61 temperature 30 1440 < th dose independent rect. 13 7
780 560.90 temperature 30 1440 > th dose independent rect. 13 6
848 561.59 radiation 20 1440 < th dose dependent rect. 18 9
878 561.88 wind 5 43200 > th dose dependent rect. 10 4
921 562.63 wind 3 43200 > th dose dependent rect. 11 1
933 562.76 temperature 30 1440 < th dose independent rect. 18 22
959 563.13 wind 5 43200 > th dose dependent rect. 9 6