Os03g0655300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HSP20-like chaperone domain containing protein.
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Os03g0655300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HSP20-like chaperone domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 62.71 | 0.372 | 8.64 | 0.393 | 0.67 | -1.94 | -0.118 | -0.994 | -0.141 | 13.5 | 0.9494 | 1434 | -- | -- |
| 63.11 | 0.37 | 8.65 | 0.328 | 0.654 | -1.72 | -0.138 | -- | -0.143 | 13.4 | 1.274 | 1434 | -- | -- |
| 62.71 | 0.369 | 8.64 | 0.385 | 0.705 | -1.97 | -- | -1.07 | -0.145 | 13.3 | 0.8765 | 1426 | -- | -- |
| 63.17 | 0.37 | 8.65 | 0.309 | 0.675 | -1.71 | -- | -- | -0.146 | 13.4 | 1.25 | 1431 | -- | -- |
| 64.94 | 0.375 | 8.65 | 0.406 | -- | -2.09 | -- | -0.356 | -0.134 | -- | 1 | 1627 | -- | -- |
| 97.35 | 0.463 | 8.6 | 0.718 | 0.642 | -- | -0.327 | -- | 0.0735 | 13.4 | -- | -- | -- | -- |
| 97.78 | 0.463 | 8.6 | 0.707 | 0.642 | -- | -- | -- | 0.0718 | 13.4 | -- | -- | -- | -- |
| 64.36 | 0.374 | 8.66 | 0.37 | -- | -2.04 | -- | -- | -0.146 | -- | 1.717 | 1612 | -- | -- |
| 65.2 | 0.376 | 8.66 | -- | 0.681 | -1.84 | -- | -- | -0.189 | 13.4 | 1.047 | 1428 | -- | -- |
| 123.13 | 0.518 | 8.61 | 0.682 | -- | -- | -- | -- | 0.0581 | -- | -- | -- | -- | -- |
| 110.97 | 0.493 | 8.62 | -- | 0.63 | -- | -- | -- | -0.00698 | 13.4 | -- | -- | -- | -- |
| 67.09 | 0.381 | 8.67 | -- | -- | -2.23 | -- | -- | -0.204 | -- | 1.056 | 1593 | -- | -- |
| 135.39 | 0.543 | 8.63 | -- | -- | -- | -- | -- | -0.0175 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 59.85 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 4 | 60.16 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 5 | 60.18 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 6 | 60.26 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 21 |
| 17 | 60.63 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 20 | 60.68 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 10 |
| 21 | 60.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 22 | 60.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 10 |
| 23 | 60.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 12 |
| 34 | 60.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 35 | 60.75 | radiation | 1 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 82 | 61.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 22 |
| 111 | 61.79 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 114 | 62.03 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 116 | 62.06 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 117 | 62.07 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 10 |
| 120 | 62.11 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 153 | 62.32 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 162 | 62.39 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 245 | 62.70 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 17 |
| 247 | 62.71 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 276 | 62.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 289 | 62.76 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 365 | 63.05 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 22 |
| 468 | 64.16 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 470 | 64.17 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 498 | 64.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 3 | 16 |
| 528 | 64.36 | radiation | 1 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 532 | 64.37 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 567 | 64.49 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 606 | 64.68 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 682 | 65.09 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 700 | 65.20 | wind | 7 | 43200 | > th | dose independent | rect. | 13 | 5 |
| 710 | 65.29 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 730 | 65.47 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 6 |
| 745 | 65.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 16 | 23 |
| 758 | 65.63 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 8 |
| 796 | 65.83 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 2 |
| 798 | 65.84 | wind | 7 | 43200 | > th | dose dependent | rect. | 14 | 6 |
| 879 | 66.35 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |