BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0655300 Os03g0655300|J065184B16
         (54 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G03773.2  | chr3:951628-953490 FORWARD LENGTH=205               78   8e-16
AT4G02450.1  | chr4:1073987-1075765 REVERSE LENGTH=242             49   6e-07

>AT3G03773.2 | chr3:951628-953490 FORWARD LENGTH=205
          Length = 204

 Score = 78.2 bits (191), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 37/51 (72%), Positives = 43/51 (84%), Gaps = 1/51 (1%)

Query: 2   SKTKTKMGLRNIICSIQKEKKGWWKRLLKSEEK-HPYIKVDWNKWCDEDEE 51
           ++ +  +GLRNII SIQKE++ WW RLLKSEEK  PYIKVDWNKWCDEDEE
Sbjct: 116 TEYRKNVGLRNIIFSIQKEERSWWTRLLKSEEKPAPYIKVDWNKWCDEDEE 166



>AT4G02450.1 | chr4:1073987-1075765 REVERSE LENGTH=242
          Length = 241

 Score = 48.5 bits (114), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 34/49 (69%)

Query: 3   KTKTKMGLRNIICSIQKEKKGWWKRLLKSEEKHPYIKVDWNKWCDEDEE 51
           ++K  +G R+I C I+K +   W +LL+ ++   Y+KVDW+KW DED+E
Sbjct: 65  ESKINIGERSIFCIIEKAEPERWNKLLRVKKPPHYVKVDWDKWVDEDDE 113



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.313    0.131    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,446,136
Number of extensions: 50442
Number of successful extensions: 107
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 2
Length of query: 54
Length of database: 11,106,569
Length adjustment: 27
Effective length of query: 27
Effective length of database: 10,366,337
Effective search space: 279891099
Effective search space used: 279891099
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 105 (45.1 bits)