Os03g0648900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : HAD-superfamily subfamily IE hydrolase protein.
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Os03g0648900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : HAD-superfamily subfamily IE hydrolase protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 32.42 | 0.268 | 10.4 | -0.139 | 0.454 | -0.422 | -0.0901 | 0.6 | -0.33 | 14.7 | 20.5 | 252 | -- | -- |
| 33.72 | 0.27 | 10.4 | -0.199 | 0.431 | -0.518 | 0.0621 | -- | -0.341 | 14.8 | 20.04 | 307 | -- | -- |
| 32.32 | 0.265 | 10.4 | -0.114 | 0.431 | -0.433 | -- | 0.643 | -0.321 | 14.9 | 20.51 | 365 | -- | -- |
| 33.62 | 0.27 | 10.4 | -0.204 | 0.452 | -0.573 | -- | -- | -0.359 | 14.9 | 19.69 | 306 | -- | -- |
| 41.86 | 0.301 | 10.4 | -0.104 | -- | -0.404 | -- | 0.718 | -0.33 | -- | 20.5 | 603 | -- | -- |
| 41.66 | 0.303 | 10.5 | -0.397 | 0.385 | -- | 0.104 | -- | -0.45 | 14.7 | -- | -- | -- | -- |
| 41.7 | 0.302 | 10.5 | -0.394 | 0.385 | -- | -- | -- | -0.45 | 14.6 | -- | -- | -- | -- |
| 41.92 | 0.302 | 10.4 | -0.0986 | -- | -0.685 | -- | -- | -0.327 | -- | 19.1 | 2262 | -- | -- |
| 34.54 | 0.274 | 10.4 | -- | 0.461 | -0.626 | -- | -- | -0.351 | 14.8 | 19.4 | 305 | -- | -- |
| 50.37 | 0.332 | 10.5 | -0.41 | -- | -- | -- | -- | -0.459 | -- | -- | -- | -- | -- |
| 45.79 | 0.317 | 10.4 | -- | 0.393 | -- | -- | -- | -0.406 | 14.7 | -- | -- | -- | -- |
| 42.06 | 0.302 | 10.4 | -- | -- | -0.726 | -- | -- | -0.31 | -- | 19.1 | 2283 | -- | -- |
| 54.82 | 0.346 | 10.5 | -- | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.98 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 18 |
| 45 | 29.25 | temperature | 20 | 270 | > th | dose independent | rect. | 22 | 10 |
| 46 | 29.27 | temperature | 15 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 59 | 29.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 15 | 18 |
| 157 | 31.19 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 22 |
| 186 | 31.55 | temperature | 10 | 270 | > th | dose dependent | rect. | 22 | 10 |
| 197 | 31.66 | radiation | 10 | 4320 | < th | dose dependent | rect. | 21 | 8 |
| 217 | 31.83 | temperature | 20 | 270 | > th | dose independent | rect. | 1 | 18 |
| 233 | 31.93 | radiation | 30 | 14400 | < th | dose dependent | rect. | 21 | 8 |
| 288 | 32.34 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 1 |
| 294 | 32.37 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 312 | 32.52 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 1 |
| 319 | 32.54 | temperature | 20 | 10 | > th | dose independent | rect. | 24 | 9 |
| 324 | 32.56 | temperature | 30 | 90 | < th | dose dependent | rect. | 19 | 10 |
| 332 | 32.62 | radiation | 40 | 10 | < th | dose dependent | rect. | 12 | 22 |
| 337 | 32.68 | temperature | 20 | 270 | < th | dose independent | rect. | 15 | 19 |
| 338 | 32.69 | temperature | 20 | 270 | > th | dose independent | sin | 11 | NA |
| 339 | 32.69 | radiation | 20 | 90 | < th | dose independent | rect. | 3 | 16 |
| 344 | 32.71 | temperature | 20 | 10 | > th | dose independent | sin | 9 | NA |
| 354 | 32.76 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 3 |
| 364 | 32.77 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 22 |
| 365 | 32.77 | radiation | 30 | 10 | < th | dose independent | rect. | 12 | 22 |
| 374 | 32.79 | temperature | 20 | 270 | < th | dose independent | sin | 11 | NA |
| 387 | 32.84 | radiation | 40 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 410 | 32.89 | temperature | 20 | 10 | < th | dose independent | sin | 9 | NA |
| 415 | 32.90 | wind | 1 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 418 | 32.90 | radiation | 20 | 270 | < th | dose dependent | sin | 5 | NA |
| 421 | 32.91 | temperature | 20 | 270 | > th | dose independent | rect. | 3 | 3 |
| 425 | 32.94 | wind | 1 | 43200 | < th | dose independent | rect. | 9 | 2 |
| 426 | 32.94 | radiation | 40 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 451 | 33.01 | radiation | 1 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 453 | 33.02 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 463 | 33.03 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 23 |
| 466 | 33.03 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 473 | 33.04 | radiation | 1 | 270 | > th | dose dependent | rect. | 5 | 8 |
| 488 | 33.06 | radiation | 30 | 90 | < th | dose independent | rect. | 13 | 20 |
| 494 | 33.06 | radiation | 40 | 10 | < th | dose dependent | rect. | 4 | 16 |
| 501 | 33.08 | temperature | 20 | 270 | < th | dose independent | rect. | 8 | 23 |
| 510 | 33.10 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 20 |
| 512 | 33.11 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 535 | 33.13 | radiation | 40 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 559 | 33.17 | wind | 1 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 566 | 33.19 | radiation | 1 | 4320 | < th | dose independent | rect. | 21 | 8 |
| 567 | 33.19 | radiation | 40 | 270 | < th | dose independent | rect. | 11 | 20 |
| 570 | 33.19 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 581 | 33.21 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 585 | 33.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 19 | 9 |
| 589 | 33.23 | radiation | 40 | 90 | < th | dose dependent | rect. | 13 | 22 |
| 591 | 33.24 | atmosphere | 1000 | 90 | > th | dose independent | rect. | 4 | 15 |
| 606 | 33.26 | radiation | 10 | 90 | > th | dose independent | rect. | 8 | 7 |
| 607 | 33.26 | radiation | 10 | 270 | > th | dose independent | rect. | 6 | 8 |
| 627 | 33.27 | radiation | 1 | 270 | > th | dose dependent | sin | 7 | NA |
| 641 | 33.29 | radiation | 30 | 10 | < th | dose dependent | sin | 0 | NA |
| 656 | 33.30 | humidity | 80 | 90 | < th | dose independent | rect. | 23 | 16 |
| 680 | 33.34 | radiation | 20 | 14400 | < th | dose dependent | rect. | 24 | 5 |
| 693 | 33.36 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 20 |
| 722 | 33.37 | humidity | 90 | 90 | < th | dose dependent | rect. | 20 | 19 |
| 735 | 33.39 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 738 | 33.39 | temperature | 20 | 10 | > th | dose independent | rect. | 1 | 19 |
| 745 | 33.39 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 755 | 33.41 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 22 |
| 764 | 33.42 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 768 | 33.43 | temperature | 20 | 10 | > th | dose independent | rect. | 3 | 17 |
| 805 | 33.47 | radiation | 30 | 10 | < th | dose independent | rect. | 12 | 8 |
| 841 | 33.51 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 843 | 33.51 | radiation | 10 | 270 | < th | dose independent | rect. | 1 | 16 |
| 856 | 33.51 | humidity | 90 | 90 | < th | dose dependent | rect. | 22 | 17 |
| 898 | 33.55 | temperature | 20 | 90 | > th | dose independent | rect. | 3 | 23 |
| 911 | 33.56 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 3 |
| 938 | 33.57 | temperature | 25 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 962 | 33.59 | atmosphere | 1000 | 10 | > th | dose independent | rect. | 4 | 16 |
| 1000 | 33.62 | atmosphere | 1000 | 270 | > th | dose independent | rect. | 12 | 7 |