BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0648900 Os03g0648900|AK060491
         (343 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38680.1  | chr2:16174011-16175873 REVERSE LENGTH=316          404   e-113

>AT2G38680.1 | chr2:16174011-16175873 REVERSE LENGTH=316
          Length = 315

 Score =  404 bits (1038), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 195/289 (67%), Positives = 242/289 (83%), Gaps = 2/289 (0%)

Query: 55  SVVADADGLARKVAAIRAAGPAKLQVIADFDGTLTRYWYDGSRG-QSSHGLLRQGNEEYD 113
           +V+A    L  K+  IR AGP+K QVIADFD TLTRY  +G RG Q+SHGLL+QG+  YD
Sbjct: 10  TVIAHPRALTDKMTLIRDAGPSKFQVIADFDATLTRYRVNGLRGRQTSHGLLQQGDAYYD 69

Query: 114 AKREELFEHYHPIEICPDIPLPEKAKLMEEWWEKTHALLIEGGLTYEAIRQSVADAKITF 173
           AKR+ L++HYHP+EI P IP+ EK KLMEEWW KTH LLIEGGLTY+AI++SVA++ I F
Sbjct: 70  AKRQALYDHYHPLEISPVIPIDEKTKLMEEWWGKTHELLIEGGLTYDAIKKSVANSSIAF 129

Query: 174 RDGVVKLFEFLEERDIPVLVFSAGLADIIEEVFRQKLHRSFKNIKVVSNRMVFNEEGRLV 233
           R+GV +LFEFLE+++IPVL+FSAGLAD+IEEV RQ L R+FKN+K+VSNRMVFN++G+LV
Sbjct: 130 REGVSELFEFLEKKEIPVLIFSAGLADVIEEVLRQNLDRTFKNVKIVSNRMVFNDDGQLV 189

Query: 234 SFKGKTIHVLNKNEHALDMAAPVHDNLGDPNGYTDDYSL-VKKRTNVLLLGDHIGDLGMS 292
           SFKGK IHVLNKNEHALDMAAP+HD LG   G  D+ ++ +K+R NVLL+GDH+GDL MS
Sbjct: 190 SFKGKLIHVLNKNEHALDMAAPLHDRLGVDIGEEDEENVNMKERRNVLLMGDHLGDLRMS 249

Query: 293 DGLNYENRIAVGFLNNNIEKSLKDYSEAFDIVYLNDAPMVGVVELVSEL 341
           DGL+YE RI++GFLN+NIEKSL+ Y E+FD+VYLNDAPM G +ELVS L
Sbjct: 250 DGLDYETRISIGFLNDNIEKSLESYRESFDLVYLNDAPMWGALELVSRL 298



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,513,229
Number of extensions: 286087
Number of successful extensions: 714
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 244
Effective length of database: 8,392,385
Effective search space: 2047741940
Effective search space used: 2047741940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)