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Os03g0647400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : GCK domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.62 (0.0255) R2 : 0.783
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.86 (0.0817) R2dC : 0.388 R2C : 0.657
β3 : -1.13 (0.0871) R2dE : 0.127 R2E : 0.396
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0414 (0.0539) R2dN8 : 0.000103 R2N8 : -0.00195
σ : 0.479
deviance : 105.56
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_____
C
peak time of C : 16
E
wheather : wind
threshold : 4.2
memory length : 242
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 2.84
open length of G : 2.7

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
101.78 0.474 8.62 0.338 1.85 -1.11 0.00729 -0.416 0.0596 15.9 4.23 249 2.93 2.47
102.01 0.47 8.62 0.358 1.86 -1.11 0.177 -- 0.0537 15.9 4.3 248 2.86 2.55
101.77 0.47 8.62 0.338 1.85 -1.11 -- -0.423 0.0601 15.9 4.211 248 2.92 2.48
102.04 0.47 8.62 0.363 1.85 -1.14 -- -- 0.0643 15.9 4.299 244 2.85 2.65
193.69 0.648 8.59 0.346 -- -2.11 -- -0.223 0.0729 -- 10.78 379 0.883 2.7
133.53 0.542 8.65 0.3 2.56 -- 0.464 -- -0.0127 16.5 -- -- -- --
134.11 0.542 8.65 0.303 2.56 -- -- -- -0.0102 16.5 -- -- -- --
178.04 0.621 8.57 0.416 -- -2.23 -- -- 0.133 -- 5.2 370 0.264 4.35
105.56 0.479 8.62 -- 1.86 -1.13 -- -- 0.0414 16 4.2 242 2.84 2.7
485.43 1.03 8.63 0.203 -- -- -- -- -0.0778 -- -- -- -- --
136.53 0.547 8.66 -- 2.56 -- -- -- -0.044 16.5 -- -- -- --
181.54 0.628 8.6 -- -- -2.24 -- -- 0.0642 -- 5.461 367 0.167 4.55
486.52 1.03 8.64 -- -- -- -- -- -0.1 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 103.25 wind 5.0 270 < th dose independent rect. 3 2
2 103.41 wind 5.0 270 < th dose independent rect. 2 4
4 105.20 wind 9.0 270 < th dose dependent rect. 3 2
6 105.23 precipitation 0.1 270 < th dose independent rect. 3 2
7 105.23 precipitation 0.1 270 < th dose dependent rect. 3 2
9 105.59 wind 9.0 270 < th dose dependent rect. 2 4
11 105.80 wind 9.0 270 < th dose independent rect. 5 22
13 106.03 temperature 10.0 270 > th dose independent rect. 3 2
15 106.03 temperature 30.0 270 < th dose independent rect. 3 2
16 106.03 humidity 50.0 270 > th dose independent rect. 3 2
19 106.03 atmosphere 995.0 270 > th dose independent rect. 3 2
20 106.03 atmosphere 1010.0 270 < th dose independent rect. 3 2
22 106.03 radiation 20.0 270 < th dose independent rect. 3 2
25 106.03 temperature 10.0 270 > th dose independent rect. 5 22
26 106.04 radiation 1.0 270 < th dose dependent rect. 3 2
27 106.05 precipitation 0.1 270 < th dose independent rect. 5 22
28 106.05 radiation 40.0 270 < th dose dependent rect. 3 2
29 106.05 precipitation 0.1 270 < th dose dependent rect. 5 22
35 106.13 radiation 1.0 270 < th dose independent rect. 3 2
38 106.16 precipitation 0.1 270 < th dose independent rect. 2 4
39 106.16 precipitation 0.1 270 < th dose dependent rect. 2 4
40 106.29 precipitation 0.1 270 < th dose independent rect. 6 20
41 106.29 precipitation 0.1 270 < th dose dependent rect. 6 20
42 106.46 atmosphere 1005.0 270 > th dose independent rect. 2 4
43 106.50 atmosphere 1005.0 270 > th dose independent rect. 3 2
44 106.57 wind 9.0 270 < th dose independent rect. 6 20
45 106.69 wind 5.0 10 < th dose independent rect. 4 4
46 106.71 atmosphere 1010.0 270 < th dose independent rect. 2 4
48 106.79 radiation 1.0 270 < th dose dependent rect. 2 17
50 106.84 temperature 10.0 270 > th dose independent rect. 2 4
52 106.84 temperature 30.0 270 < th dose independent rect. 2 4
53 106.84 humidity 50.0 270 > th dose independent rect. 2 4
56 106.84 atmosphere 995.0 270 > th dose independent rect. 2 4
58 106.84 radiation 20.0 270 < th dose independent rect. 2 4
61 106.84 temperature 10.0 270 > th dose independent rect. 6 20
62 106.85 wind 9.0 10 < th dose dependent rect. 4 4
64 106.87 humidity 50.0 270 > th dose dependent rect. 3 2
67 106.96 radiation 40.0 270 < th dose dependent rect. 2 4
72 107.06 radiation 1.0 270 < th dose independent rect. 2 17
81 107.17 precipitation 0.1 90 < th dose independent rect. 8 19
83 107.17 precipitation 0.1 90 < th dose dependent rect. 8 19
92 107.34 wind 9.0 10 < th dose independent rect. 8 20
100 107.48 precipitation 0.1 10 < th dose independent rect. 4 4
103 107.48 precipitation 0.1 10 < th dose dependent rect. 4 4
106 107.61 temperature 10.0 10 > th dose independent rect. 4 4
108 107.61 temperature 30.0 10 < th dose independent rect. 4 4
109 107.61 humidity 50.0 10 > th dose independent rect. 4 4
111 107.61 atmosphere 995.0 10 > th dose independent rect. 4 4
112 107.61 atmosphere 1015.0 10 < th dose independent rect. 4 4
113 107.61 temperature 10.0 10 > th dose independent rect. 8 20
117 107.68 atmosphere 995.0 270 > th dose dependent rect. 3 2
118 107.70 radiation 1.0 270 < th dose independent rect. 2 7
133 107.89 radiation 40.0 10 < th dose independent rect. 4 4
143 107.98 humidity 50.0 270 > th dose dependent rect. 2 4
183 108.23 atmosphere 995.0 270 > th dose dependent rect. 2 4
223 108.44 atmosphere 995.0 10 > th dose dependent rect. 4 4
273 108.63 temperature 10.0 270 > th dose dependent rect. 3 2
287 108.74 atmosphere 1005.0 10 > th dose independent rect. 4 4
291 108.77 humidity 50.0 30 > th dose dependent rect. 4 4
332 109.10 temperature 10.0 270 > th dose dependent rect. 2 4
366 109.40 temperature 30.0 270 < th dose dependent rect. 3 2
379 109.48 radiation 40.0 10 < th dose dependent rect. 4 4
381 109.49 wind 1.0 270 > th dose independent rect. 3 1
385 109.51 atmosphere 1000.0 270 > th dose independent rect. 22 3
390 109.54 precipitation 0.1 270 < th dose independent rect. 6 9
392 109.54 precipitation 0.1 270 < th dose dependent rect. 6 9
394 109.56 wind 9.0 270 < th dose independent rect. 6 9
432 109.79 atmosphere 995.0 10 > th dose independent rect. 8 20
433 109.79 humidity 50.0 270 > th dose dependent rect. 21 4
458 109.87 temperature 10.0 270 > th dose independent rect. 6 9
459 109.87 atmosphere 1015.0 270 < th dose independent rect. 6 9
460 109.87 temperature 10.0 270 > th dose independent rect. 15 15
462 109.90 wind 1.0 270 > th dose independent rect. 2 3
486 109.99 atmosphere 1000.0 10 > th dose independent rect. 22 6
514 110.12 humidity 60.0 90 > th dose dependent rect. 3 8
518 110.14 wind 9.0 270 < th dose independent rect. 15 15
525 110.19 radiation 40.0 270 < th dose independent rect. 15 15
529 110.21 temperature 10.0 10 > th dose dependent rect. 4 4
547 110.26 atmosphere 995.0 270 > th dose independent rect. 6 9
549 110.26 radiation 40.0 270 < th dose dependent rect. 15 15
559 110.34 radiation 1.0 270 < th dose dependent sin 2 NA
568 110.40 radiation 20.0 270 < th dose independent rect. 1 8
576 110.45 atmosphere 995.0 270 > th dose independent rect. 6 20
598 110.55 radiation 40.0 30 < th dose independent rect. 4 18
600 110.57 radiation 1.0 270 < th dose independent sin 2 NA
620 110.61 temperature 30.0 10 < th dose dependent rect. 4 4
642 110.65 humidity 80.0 30 > th dose independent rect. 4 8
646 110.68 radiation 30.0 90 < th dose independent rect. 3 8
651 110.69 humidity 60.0 10 > th dose dependent rect. 4 8
658 110.74 humidity 60.0 30 > th dose dependent rect. 22 6
719 111.03 temperature 10.0 10 > th dose dependent rect. 8 20
728 111.07 precipitation 0.1 270 < th dose independent rect. 15 15
732 111.07 precipitation 0.1 270 < th dose dependent rect. 15 15
748 111.14 atmosphere 1000.0 270 > th dose independent rect. 20 6
749 111.14 radiation 1.0 270 < th dose independent rect. 1 20
754 111.17 precipitation 0.1 270 < th dose independent rect. 19 7
755 111.17 atmosphere 995.0 270 > th dose independent rect. 15 15
756 111.17 precipitation 0.1 270 < th dose dependent rect. 19 7
762 111.20 radiation 40.0 30 < th dose dependent rect. 4 18
764 111.21 humidity 50.0 270 > th dose dependent rect. 20 6
771 111.25 radiation 1.0 270 > th dose independent sin 2 NA
787 111.30 humidity 60.0 270 > th dose independent rect. 19 7
793 111.31 temperature 10.0 270 > th dose independent rect. 19 7
794 111.31 temperature 30.0 270 < th dose independent rect. 19 7
797 111.31 radiation 1.0 270 < th dose independent rect. 19 7
802 111.31 temperature 10.0 270 > th dose independent rect. 2 17
803 111.31 atmosphere 1015.0 270 < th dose independent rect. 2 17
805 111.31 radiation 1.0 270 < th dose dependent rect. 19 7
817 111.36 wind 9.0 270 < th dose independent rect. 19 7
835 111.40 temperature 10.0 270 > th dose independent rect. 21 4
836 111.40 temperature 30.0 270 < th dose independent rect. 21 4
837 111.40 humidity 50.0 270 > th dose independent rect. 21 4
841 111.40 radiation 1.0 270 < th dose independent rect. 21 4
846 111.40 radiation 1.0 270 > th dose independent rect. 6 9
847 111.40 temperature 10.0 270 > th dose independent rect. 1 20
848 111.40 radiation 1.0 270 < th dose dependent rect. 21 4
855 111.41 atmosphere 1015.0 270 < th dose independent rect. 1 20
858 111.42 wind 9.0 270 < th dose independent rect. 21 4
869 111.49 radiation 20.0 30 < th dose independent rect. 4 18
871 111.51 precipitation 0.1 270 < th dose independent rect. 21 4
875 111.51 precipitation 0.1 270 < th dose dependent rect. 21 4
885 111.55 radiation 1.0 270 < th dose dependent rect. 1 20
910 111.67 precipitation 0.1 270 < th dose independent rect. 2 17
913 111.67 precipitation 0.1 270 < th dose dependent rect. 2 17
921 111.72 atmosphere 1015.0 10 < th dose independent rect. 8 20
971 111.92 wind 9.0 270 < th dose independent rect. 2 17