BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0647400 Os03g0647400|AK073665
         (196 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G14060.1  | chr1:4817354-4817893 REVERSE LENGTH=180             92   1e-19
AT5G02210.1  | chr5:439253-439874 REVERSE LENGTH=162               59   1e-09
AT5G57570.1  | chr5:23313784-23314194 REVERSE LENGTH=137           57   6e-09
AT5G57640.1  | chr5:23344766-23345446 FORWARD LENGTH=227           51   5e-07

>AT1G14060.1 | chr1:4817354-4817893 REVERSE LENGTH=180
          Length = 179

 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 75  CGFCLFMKGGGCREEFVGWEKCVEDAEKAGDDVVERCYEVTAALHKCMEAHAEYYHPIL 133
           CGFCLFMKGGGC++ FV WE+CVE AEK  +D+V  C EVT+ L KCM+ H++YY PIL
Sbjct: 82  CGFCLFMKGGGCKDSFVAWEECVEAAEKNKEDIVTNCMEVTSMLKKCMDEHSDYYQPIL 140



>AT5G02210.1 | chr5:439253-439874 REVERSE LENGTH=162
          Length = 161

 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 28/61 (45%), Positives = 36/61 (59%), Gaps = 5/61 (8%)

Query: 77  FCLFMKGGGCREEFVGWEK----CVEDAEKAGDDVVERCYEVTAALHKCMEAHAEYYHPI 132
           F  FMKGGGC+E F  W        E+AEK   D+V +C  +     KCM+ H++YYHPI
Sbjct: 80  FVEFMKGGGCKESFTAWNDDCNFTEEEAEK-NKDLVTKCAGLFGTFSKCMDTHSDYYHPI 138

Query: 133 L 133
           L
Sbjct: 139 L 139



>AT5G57570.1 | chr5:23313784-23314194 REVERSE LENGTH=137
          Length = 136

 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 26/60 (43%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 75  CGFCLFMKGGGCREEFVGWEKCVEDAEKAGDDV-VERCYEVTAALHKCMEAHAEYYHPIL 133
           C  C F+KGG C+E F+  E+CV++AE++G++    +C EV A    CM  +  YY PIL
Sbjct: 53  CRLCRFIKGGECKESFIALEQCVDEAEESGEESDFTKCKEVRAKFKTCMYENPVYYEPIL 112



>AT5G57640.1 | chr5:23344766-23345446 FORWARD LENGTH=227
          Length = 226

 Score = 50.8 bits (120), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 75  CGFCLFMKGGGCREEFVGWEKCVEDAEKAGDDVVERCYEVTAALHKCMEAHAEYYHPIL 133
           C  C F+KGG C+E F   E C ++A+K  +D V +C E       CM  +  YY P+L
Sbjct: 84  CPLCQFIKGGECKEAFTELENCCDEAKKNNEDHVSKCKEARLIFKTCMYDNPVYYEPLL 142



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.325    0.140    0.470 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,568,072
Number of extensions: 50927
Number of successful extensions: 159
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 4
Length of query: 196
Length of database: 11,106,569
Length adjustment: 93
Effective length of query: 103
Effective length of database: 8,556,881
Effective search space: 881358743
Effective search space used: 881358743
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 109 (46.6 bits)