Os03g0640200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os03g0640200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 58.42 | 0.359 | 7.72 | -1.23 | 0.371 | 0.0815 | 0.101 | 3.54 | 0.21 | 6.54 | 29.9 | 224 | -- | -- |
| 59.53 | 0.359 | 7.68 | -0.937 | 0.34 | 0.46 | 0.307 | -- | 0.238 | 6.32 | 29.7 | 227 | -- | -- |
| 58.44 | 0.356 | 7.72 | -1.23 | 0.369 | 0.0835 | -- | 3.6 | 0.209 | 6.64 | 29.92 | 224 | -- | -- |
| 59.55 | 0.359 | 7.67 | -0.911 | 0.349 | 0.486 | -- | -- | 0.247 | 6.9 | 29.8 | 228 | -- | -- |
| 64.35 | 0.374 | 7.73 | -1.21 | -- | 0.255 | -- | 3.73 | 0.194 | -- | 30 | 238 | -- | -- |
| 64.51 | 0.377 | 7.67 | -0.994 | 0.501 | -- | 0.724 | -- | 0.262 | 5.87 | -- | -- | -- | -- |
| 65.62 | 0.379 | 7.67 | -0.987 | 0.509 | -- | -- | -- | 0.26 | 6.26 | -- | -- | -- | -- |
| 63.29 | 0.371 | 7.67 | -0.88 | -- | 0.625 | -- | -- | 0.319 | -- | 28.91 | 387 | -- | -- |
| 80.86 | 0.419 | 7.65 | -- | 0.259 | 0.635 | -- | -- | 0.362 | 7.77 | 29.53 | 265 | -- | -- |
| 79.04 | 0.415 | 7.68 | -0.973 | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
| 91.31 | 0.447 | 7.65 | -- | 0.495 | -- | -- | -- | 0.37 | 6.37 | -- | -- | -- | -- |
| 83.44 | 0.425 | 7.65 | -- | -- | 0.709 | -- | -- | 0.421 | -- | 28.9 | 384 | -- | -- |
| 104.04 | 0.476 | 7.66 | -- | -- | -- | -- | -- | 0.379 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 56.57 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 12 |
| 2 | 56.77 | temperature | 30.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 3 | 56.81 | temperature | 30.0 | 270 | < th | dose independent | sin | 4 | NA |
| 16 | 57.44 | temperature | 30.0 | 270 | > th | dose independent | rect. | 18 | 22 |
| 20 | 57.63 | temperature | 30.0 | 270 | > th | dose independent | sin | 3 | NA |
| 23 | 57.70 | temperature | 30.0 | 270 | > th | dose independent | rect. | 8 | 8 |
| 165 | 58.41 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 18 | 22 |
| 170 | 58.48 | humidity | 50.0 | 14400 | > th | dose independent | sin | 13 | NA |
| 171 | 58.48 | temperature | 30.0 | 90 | > th | dose dependent | rect. | 8 | 8 |
| 190 | 58.54 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 10 |
| 196 | 58.55 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 16 |
| 197 | 58.55 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 18 |
| 199 | 58.56 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 206 | 58.56 | temperature | 30.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 210 | 58.58 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 19 |
| 211 | 58.58 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 21 |
| 230 | 58.60 | temperature | 30.0 | 270 | < th | dose independent | rect. | 11 | 10 |
| 237 | 58.65 | temperature | 30.0 | 270 | > th | dose independent | rect. | 15 | 22 |
| 239 | 58.66 | humidity | 70.0 | 270 | > th | dose independent | rect. | 13 | 8 |
| 257 | 58.67 | radiation | 40.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 258 | 58.67 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 15 | 21 |
| 259 | 58.68 | humidity | 70.0 | 270 | > th | dose independent | rect. | 12 | 22 |
| 260 | 58.69 | humidity | 50.0 | 14400 | < th | dose independent | sin | 13 | NA |
| 283 | 58.79 | temperature | 30.0 | 720 | < th | dose independent | rect. | 20 | 16 |
| 302 | 58.81 | temperature | 30.0 | 270 | < th | dose independent | no | NA | NA |
| 307 | 58.84 | temperature | 30.0 | 270 | < th | dose independent | rect. | 13 | 8 |
| 316 | 58.87 | atmosphere | 1005.0 | 270 | < th | dose independent | rect. | 24 | 18 |
| 322 | 58.89 | temperature | 30.0 | 270 | < th | dose independent | sin | 20 | NA |
| 323 | 58.89 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 14 | 4 |
| 344 | 58.91 | radiation | 40.0 | 30 | < th | dose independent | rect. | 5 | 10 |
| 348 | 58.93 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 366 | 58.96 | radiation | 40.0 | 720 | < th | dose independent | sin | 10 | NA |
| 377 | 58.99 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 17 | 20 |
| 380 | 59.00 | temperature | 30.0 | 270 | > th | dose independent | no | NA | NA |
| 474 | 59.00 | temperature | 30.0 | 90 | > th | dose dependent | sin | 3 | NA |
| 478 | 59.01 | radiation | 30.0 | 720 | < th | dose independent | rect. | 17 | 16 |
| 500 | 59.03 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 13 | 19 |
| 543 | 59.06 | radiation | 30.0 | 720 | > th | dose dependent | rect. | 8 | 1 |
| 565 | 59.08 | humidity | 50.0 | 14400 | < th | dose independent | sin | 10 | NA |
| 570 | 59.08 | temperature | 30.0 | 270 | > th | dose dependent | sin | 7 | NA |
| 577 | 59.09 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 13 | 8 |
| 586 | 59.11 | temperature | 30.0 | 270 | < th | dose independent | rect. | 17 | 22 |
| 604 | 59.12 | humidity | 70.0 | 30 | > th | dose independent | rect. | 15 | 20 |
| 626 | 59.14 | temperature | 30.0 | 720 | < th | dose independent | rect. | 7 | 10 |
| 632 | 59.15 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 10 | 1 |
| 639 | 59.17 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 642 | 59.18 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 647 | 59.19 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 650 | 59.20 | radiation | 40.0 | 720 | < th | dose independent | rect. | 3 | 9 |
| 652 | 59.20 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 3 | 16 |
| 656 | 59.20 | temperature | 30.0 | 30 | > th | dose dependent | no | NA | NA |
| 776 | 59.21 | temperature | 30.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 811 | 59.25 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 10 | 1 |
| 821 | 59.27 | humidity | 60.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 858 | 59.29 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 3 | 15 |
| 870 | 59.29 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 3 | 15 |
| 875 | 59.30 | humidity | 70.0 | 14400 | < th | dose dependent | rect. | 18 | 17 |
| 876 | 59.30 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 2 | 17 |
| 881 | 59.31 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 18 | 19 |
| 883 | 59.31 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 17 | 20 |
| 884 | 59.31 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 8 | 2 |
| 889 | 59.32 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 907 | 59.32 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 11 | NA |
| 908 | 59.32 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 11 | 2 |
| 940 | 59.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 3 | 15 |
| 945 | 59.34 | temperature | 30.0 | 270 | > th | dose dependent | rect. | 8 | 5 |
| 967 | 59.36 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 7 | 7 |