Os03g0628900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Prefoldin domain containing protein.
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Os03g0628900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Prefoldin domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.83 | 0.311 | 12.4 | -0.376 | 0.491 | 1.06 | -0.0812 | -1.73 | -0.155 | 16.1 | 21.3 | 2593 | -- | -- |
| 50.04 | 0.329 | 12.3 | -0.0252 | 0.507 | 1.25 | -0.0747 | -- | -0.0944 | 16.1 | 21.4 | 2691 | -- | -- |
| 43.78 | 0.308 | 12.4 | -0.309 | 0.461 | 1.01 | -- | -1.63 | -0.154 | 15.9 | 21.83 | 2596 | -- | -- |
| 49.79 | 0.329 | 12.3 | 0.0489 | 0.488 | 1.22 | -- | -- | -0.0628 | 16.2 | 21.3 | 2689 | -- | -- |
| 53.73 | 0.341 | 12.4 | -0.374 | -- | 0.973 | -- | -1.94 | -0.208 | -- | 22.4 | 1899 | -- | -- |
| 88.86 | 0.442 | 12.3 | 0.68 | 0.43 | -- | 0.196 | -- | 0.314 | 16.7 | -- | -- | -- | -- |
| 88.97 | 0.442 | 12.3 | 0.681 | 0.431 | -- | -- | -- | 0.315 | 16.7 | -- | -- | -- | -- |
| 60.36 | 0.362 | 12.3 | -0.0611 | -- | 1.48 | -- | -- | 0.0704 | -- | 18.98 | 3336 | -- | -- |
| 49.84 | 0.329 | 12.3 | -- | 0.492 | 1.25 | -- | -- | -0.0692 | 16.2 | 21.31 | 2691 | -- | -- |
| 98.86 | 0.465 | 12.2 | 0.664 | -- | -- | -- | -- | 0.304 | -- | -- | -- | -- | -- |
| 101.17 | 0.471 | 12.3 | -- | 0.419 | -- | -- | -- | 0.239 | 16.7 | -- | -- | -- | -- |
| 59.96 | 0.361 | 12.3 | -- | -- | 1.55 | -- | -- | 0.000302 | -- | 18.91 | 3314 | -- | -- |
| 110.5 | 0.491 | 12.3 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 2 | 42.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 4 | 42.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 5 |
| 39 | 42.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 17 | 12 |
| 59 | 42.81 | temperature | 25 | 1440 | < th | dose dependent | sin | 12 | NA |
| 122 | 43.14 | temperature | 15 | 1440 | > th | dose dependent | sin | 12 | NA |
| 190 | 43.39 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 212 | 43.43 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 2 |
| 374 | 43.96 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 397 | 44.07 | temperature | 20 | 720 | > th | dose dependent | rect. | 21 | 19 |
| 418 | 44.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 2 |
| 419 | 44.13 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 512 | 44.44 | temperature | 20 | 4320 | > th | dose independent | rect. | 21 | 2 |
| 566 | 44.62 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 4 |
| 610 | 44.71 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 5 |
| 612 | 44.72 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 2 |
| 715 | 44.93 | temperature | 20 | 4320 | > th | dose independent | rect. | 19 | 5 |
| 716 | 44.93 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 726 | 44.94 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 745 | 44.97 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 3 |
| 756 | 44.98 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 786 | 45.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 794 | 45.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 812 | 45.07 | temperature | 25 | 4320 | < th | dose independent | rect. | 10 | 5 |
| 952 | 45.33 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 963 | 45.35 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 3 |