BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0628900 Os03g0628900|AK103619
         (126 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G08780.1  | chr1:2809925-2811126 REVERSE LENGTH=130            193   2e-50

>AT1G08780.1 | chr1:2809925-2811126 REVERSE LENGTH=130
          Length = 129

 Score =  193 bits (490), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 111/127 (87%), Gaps = 2/127 (1%)

Query: 2   QQGD--GTEAQVTWEDQQNINRFGRLNNRLHELHDEIKLAKEANENLDDAGNELILSDED 59
           QQG   G+E +VTWEDQQNIN F RLNNR+H+L D+IK AKE  ENL+DAGNELIL+DE+
Sbjct: 3   QQGSKSGSEMEVTWEDQQNINIFSRLNNRVHDLDDDIKSAKEKCENLEDAGNELILADEE 62

Query: 60  VVRFQIGEVFAHMPRDDVETRLEQMKEDAAKKLERLEQEKESIVSQMAELKKILYGKFKD 119
           +VRFQIGEVFAH+PRDDVET++E+MKE   K LE+LEQEKESIV+QMA LKK+LY KFKD
Sbjct: 63  MVRFQIGEVFAHVPRDDVETKIEEMKEATCKSLEKLEQEKESIVTQMAALKKVLYAKFKD 122

Query: 120 AINLEED 126
           +INLEED
Sbjct: 123 SINLEED 129



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.311    0.131    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,738,278
Number of extensions: 111997
Number of successful extensions: 759
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 39
Effective length of database: 8,721,377
Effective search space: 340133703
Effective search space used: 340133703
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 105 (45.1 bits)