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Os03g0619400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Chaperonin Cpn60/TCP-1 family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.8 (0.0169) R2 : 0.418
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.795 (0.0439) R2dC : 0.419 R2C : 0.418
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0097 (0.0356) R2dN8 : 0.000122 R2N8 : -0.00111
σ : 0.319
deviance : 46.54
__
_____
C
peak time of C : 16.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
31.47 0.264 11.9 -0.288 0.757 0.212 0.28 -5.34 -0.0112 17 30.49 1187 -- --
32.73 0.266 11.8 0.591 0.768 -0.43 0.288 -- -0.0108 17 30.65 2545 -- --
31.66 0.262 11.9 -0.292 0.759 0.212 -- -5.39 -0.0105 17 30.4 1178 -- --
32.88 0.267 11.8 0.597 0.757 -0.38 -- -- 0.00102 17 30.6 1196 -- --
61.52 0.365 11.9 -0.483 -- 0.234 -- -6.25 -0.0543 -- 30 1229 -- --
39.81 0.296 11.8 0.487 0.8 -- 0.412 -- 0.0621 16.8 -- -- -- --
40.25 0.297 11.8 0.489 0.803 -- -- -- 0.0641 16.8 -- -- -- --
62.2 0.367 11.7 0.665 -- -0.624 -- -- 0.144 -- 24.3 1251 -- --
41.66 0.301 11.8 -- 0.757 -0.308 -- -- -0.0482 17 30.85 1172 -- --
74.37 0.403 11.8 0.459 -- -- -- -- 0.0433 -- -- -- -- --
46.54 0.319 11.8 -- 0.795 -- -- -- 0.0097 16.8 -- -- -- --
71.18 0.394 11.8 -- -- 0.586 -- -- -0.0526 -- 24.5 1241 -- --
79.92 0.417 11.8 -- -- -- -- -- -0.0076 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 30.23 wind 5.0 270 < th dose independent rect. 2 3
2 30.27 temperature 10.0 270 > th dose dependent rect. 2 3
5 30.33 wind 5.0 90 < th dose independent rect. 3 5
6 30.33 temperature 10.0 90 > th dose dependent rect. 3 5
7 30.35 temperature 10.0 270 > th dose dependent rect. 1 5
8 30.47 atmosphere 1000.0 90 > th dose independent rect. 19 8
9 30.48 wind 9.0 90 < th dose dependent rect. 3 5
15 30.59 wind 7.0 10 < th dose dependent rect. 3 6
16 30.61 precipitation 0.1 270 < th dose independent rect. 3 2
18 30.61 precipitation 0.1 270 < th dose dependent rect. 3 2
22 30.66 wind 5.0 270 < th dose independent rect. 1 5
24 30.69 atmosphere 995.0 90 > th dose dependent rect. 19 8
25 30.73 precipitation 0.1 90 < th dose independent rect. 3 5
26 30.73 precipitation 0.1 90 < th dose dependent rect. 3 5
28 30.76 humidity 80.0 270 > th dose independent rect. 3 2
29 30.76 radiation 1.0 270 < th dose dependent rect. 3 2
35 30.79 wind 9.0 90 < th dose independent rect. 8 19
36 30.79 atmosphere 995.0 90 > th dose independent rect. 8 19
38 30.80 wind 9.0 270 < th dose dependent rect. 2 3
40 30.81 temperature 10.0 10 > th dose dependent rect. 3 5
42 30.82 temperature 10.0 270 > th dose independent rect. 3 2
44 30.82 temperature 30.0 270 < th dose independent rect. 3 2
45 30.82 humidity 50.0 270 > th dose independent rect. 3 2
48 30.82 atmosphere 995.0 270 > th dose independent rect. 3 2
49 30.82 atmosphere 1010.0 270 < th dose independent rect. 3 2
51 30.82 radiation 20.0 270 < th dose independent rect. 3 2
54 30.82 temperature 10.0 270 > th dose independent rect. 5 22
55 30.82 radiation 30.0 270 < th dose dependent rect. 3 2
75 30.84 humidity 50.0 270 > th dose independent rect. 5 21
81 30.85 radiation 1.0 270 < th dose independent rect. 3 2
83 30.85 atmosphere 995.0 270 > th dose independent rect. 5 21
87 30.86 temperature 10.0 90 > th dose independent rect. 3 5
89 30.86 temperature 30.0 90 < th dose independent rect. 3 5
90 30.86 humidity 50.0 90 > th dose independent rect. 3 5
92 30.86 atmosphere 995.0 90 > th dose independent rect. 3 5
93 30.86 atmosphere 1015.0 90 < th dose independent rect. 3 5
94 30.86 temperature 10.0 90 > th dose independent rect. 8 19
96 30.86 atmosphere 995.0 90 > th dose dependent rect. 8 19
97 30.87 wind 9.0 270 < th dose independent rect. 5 21
103 30.92 radiation 40.0 90 < th dose independent rect. 3 5
105 30.93 precipitation 0.1 90 < th dose independent rect. 8 19
108 30.93 precipitation 0.1 90 < th dose dependent rect. 8 19
110 30.94 temperature 10.0 270 > th dose dependent rect. 13 17
112 31.00 wind 5.0 10 < th dose independent rect. 3 6
126 31.06 temperature 30.0 270 < th dose independent rect. 17 8
139 31.13 humidity 50.0 270 > th dose dependent rect. 3 2
143 31.16 precipitation 0.1 270 < th dose independent rect. 1 5
144 31.16 atmosphere 1000.0 10 > th dose independent rect. 20 8
147 31.16 precipitation 0.1 270 < th dose dependent rect. 1 5
150 31.17 wind 1.0 270 > th dose independent rect. 3 1
154 31.20 atmosphere 995.0 270 > th dose independent rect. 6 19
163 31.23 precipitation 0.1 10 < th dose independent rect. 3 6
165 31.23 precipitation 0.1 10 < th dose dependent rect. 3 6
169 31.25 precipitation 0.1 270 < th dose independent rect. 14 15
170 31.25 precipitation 0.1 270 < th dose independent rect. 5 21
172 31.25 precipitation 0.1 270 < th dose dependent rect. 14 15
173 31.25 atmosphere 995.0 10 > th dose dependent rect. 9 18
174 31.25 precipitation 0.1 270 < th dose dependent rect. 5 21
180 31.27 humidity 70.0 270 > th dose independent rect. 17 8
187 31.29 wind 9.0 270 < th dose independent rect. 6 19
190 31.31 temperature 10.0 270 > th dose independent rect. 1 5
192 31.31 temperature 30.0 270 < th dose independent rect. 1 5
193 31.31 humidity 50.0 270 > th dose independent rect. 1 5
196 31.31 atmosphere 995.0 270 > th dose independent rect. 1 5
197 31.31 atmosphere 1015.0 270 < th dose independent rect. 1 5
198 31.31 radiation 20.0 270 < th dose independent rect. 1 5
203 31.31 temperature 10.0 270 > th dose independent rect. 6 19
211 31.34 atmosphere 995.0 10 > th dose independent rect. 9 18
212 31.34 radiation 40.0 270 < th dose dependent rect. 1 5
218 31.35 atmosphere 995.0 10 > th dose dependent rect. 20 8
241 31.37 wind 9.0 10 < th dose independent rect. 9 18
247 31.37 humidity 50.0 270 > th dose dependent rect. 17 8
257 31.40 atmosphere 1000.0 270 > th dose dependent rect. 2 3
265 31.43 temperature 10.0 10 > th dose independent rect. 3 6
267 31.43 temperature 30.0 10 < th dose independent rect. 3 6
268 31.43 humidity 50.0 10 > th dose independent rect. 3 6
270 31.43 atmosphere 995.0 10 > th dose independent rect. 3 6
271 31.43 atmosphere 1015.0 10 < th dose independent rect. 3 6
273 31.43 temperature 10.0 10 > th dose independent rect. 9 18
277 31.44 wind 9.0 270 < th dose independent rect. 5 9
278 31.44 precipitation 0.1 270 < th dose independent rect. 5 9
280 31.44 humidity 50.0 90 > th dose dependent rect. 19 8
281 31.44 precipitation 0.1 270 < th dose dependent rect. 5 9
288 31.46 radiation 10.0 270 < th dose dependent rect. 17 8
300 31.48 radiation 40.0 90 < th dose dependent rect. 3 5
304 31.49 wind 1.0 270 > th dose independent rect. 2 3
313 31.49 precipitation 0.1 10 < th dose independent rect. 9 18
315 31.49 precipitation 0.1 10 < th dose dependent rect. 9 18
316 31.50 atmosphere 1000.0 90 > th dose dependent rect. 3 5
317 31.51 temperature 10.0 270 > th dose independent rect. 5 9
318 31.51 atmosphere 995.0 270 > th dose independent rect. 5 9
319 31.51 atmosphere 1015.0 270 < th dose independent rect. 5 9
320 31.51 temperature 10.0 270 > th dose independent rect. 14 15
321 31.51 atmosphere 995.0 270 > th dose dependent rect. 17 8
337 31.54 radiation 1.0 270 < th dose dependent rect. 5 20
372 31.61 precipitation 0.1 270 < th dose independent rect. 6 19
377 31.61 precipitation 0.1 270 < th dose dependent rect. 6 19
380 31.62 wind 9.0 90 < th dose independent rect. 19 8
381 31.62 wind 9.0 270 < th dose independent rect. 14 15
390 31.64 temperature 10.0 90 > th dose independent rect. 19 8
392 31.64 humidity 50.0 90 > th dose independent rect. 19 8
395 31.64 radiation 1.0 270 < th dose independent rect. 17 8
396 31.64 radiation 1.0 90 < th dose independent rect. 19 8
401 31.64 temperature 10.0 90 > th dose independent rect. 3 16
402 31.64 atmosphere 1015.0 90 < th dose independent rect. 3 16
407 31.64 radiation 1.0 90 < th dose dependent rect. 19 8
427 31.68 humidity 50.0 90 > th dose independent rect. 8 19
448 31.72 atmosphere 1000.0 10 > th dose dependent rect. 3 5
460 31.73 radiation 1.0 270 < th dose independent rect. 5 21
468 31.76 precipitation 0.1 90 < th dose independent rect. 19 8
472 31.76 precipitation 0.1 90 < th dose dependent rect. 19 8
474 31.77 precipitation 0.1 90 < th dose independent rect. 3 16
477 31.77 precipitation 0.1 90 < th dose dependent rect. 3 16
481 31.78 humidity 50.0 90 > th dose dependent rect. 3 5
539 31.86 wind 9.0 90 < th dose independent rect. 3 16
543 31.87 radiation 1.0 270 < th dose independent rect. 13 12
544 31.87 temperature 30.0 270 < th dose independent rect. 6 19
597 31.94 precipitation 0.1 270 < th dose independent rect. 1 17
608 31.94 precipitation 0.1 270 < th dose dependent rect. 1 17
643 31.98 temperature 10.0 270 > th dose independent rect. 1 17
644 31.98 atmosphere 1015.0 270 < th dose independent rect. 1 17
650 31.99 atmosphere 1005.0 270 > th dose independent rect. 3 2
676 32.02 atmosphere 1005.0 90 > th dose independent rect. 3 5
687 32.02 temperature 10.0 10 > th dose dependent rect. 15 17
688 32.02 atmosphere 1015.0 90 < th dose dependent rect. 15 17
747 32.09 temperature 30.0 90 < th dose independent rect. 8 19
768 32.11 atmosphere 1015.0 270 < th dose dependent rect. 3 2
785 32.13 wind 9.0 270 < th dose independent rect. 1 17
842 32.19 wind 9.0 1440 < th dose independent rect. 4 5
843 32.19 temperature 10.0 1440 > th dose independent rect. 4 5
846 32.19 humidity 50.0 1440 > th dose independent rect. 4 5
848 32.19 atmosphere 995.0 1440 > th dose independent rect. 4 5
849 32.19 atmosphere 1015.0 1440 < th dose independent rect. 4 5
856 32.19 temperature 10.0 1440 > th dose independent rect. 9 19
863 32.19 atmosphere 1015.0 270 < th dose dependent rect. 13 16
879 32.21 precipitation 0.1 10 < th dose independent rect. 3 17
882 32.21 precipitation 0.1 10 < th dose dependent rect. 3 17
959 32.27 radiation 40.0 270 < th dose independent rect. 14 15
971 32.27 wind 9.0 90 < th dose dependent rect. 8 19
975 32.28 temperature 30.0 90 < th dose dependent rect. 19 8