BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0619400 Os03g0619400|J033027M19
(74 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G20890.1 | chr5:7087020-7089906 REVERSE LENGTH=528 87 2e-18
AT3G20050.1 | chr3:6998544-7002266 REVERSE LENGTH=546 60 2e-10
AT1G24510.1 | chr1:8685504-8688101 REVERSE LENGTH=536 56 5e-09
AT5G26360.1 | chr5:9255561-9258891 REVERSE LENGTH=556 53 3e-08
AT3G11830.1 | chr3:3732734-3736156 FORWARD LENGTH=558 52 4e-08
AT3G18190.1 | chr3:6232226-6233836 FORWARD LENGTH=537 52 8e-08
AT3G03960.1 | chr3:1024432-1027604 FORWARD LENGTH=550 49 7e-07
>AT5G20890.1 | chr5:7087020-7089906 REVERSE LENGTH=528
Length = 527
Score = 86.7 bits (213), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/46 (93%), Positives = 44/46 (95%)
Query: 5 LLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAG 50
L+DISKVQDDEVGDGTTSVVVLAGELLREAEKLV KIHPMTIIAG
Sbjct: 79 LVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAG 124
>AT3G20050.1 | chr3:6998544-7002266 REVERSE LENGTH=546
Length = 545
Score = 60.1 bits (144), Expect = 2e-10, Method: Composition-based stats.
Identities = 27/46 (58%), Positives = 38/46 (82%)
Query: 5 LLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAG 50
L++++++QD EVGDGTTSVV++A ELL+ A LV KIHP +II+G
Sbjct: 78 LVELAELQDREVGDGTTSVVIVAAELLKRANDLVRNKIHPTSIISG 123
>AT1G24510.1 | chr1:8685504-8688101 REVERSE LENGTH=536
Length = 535
Score = 55.8 bits (133), Expect = 5e-09, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 5/60 (8%)
Query: 5 LLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGNSHRWFNMLSRLTI 64
++++S+ QD E+GDGTT VVV+AG LL +AE+ ++ IHP+ I G + M SR+ +
Sbjct: 87 MVELSRSQDYEIGDGTTGVVVMAGALLEQAERQLDRGIHPIRIAEG-----YEMASRVAV 141
>AT5G26360.1 | chr5:9255561-9258891 REVERSE LENGTH=556
Length = 555
Score = 52.8 bits (125), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/45 (51%), Positives = 33/45 (73%)
Query: 3 NALLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTI 47
+++++S+ QD+EVGDGTTSV+VLAGE+L AE + HP I
Sbjct: 76 KSMIELSRTQDEEVGDGTTSVIVLAGEMLHVAEAFLEKNYHPTVI 120
>AT3G11830.1 | chr3:3732734-3736156 FORWARD LENGTH=558
Length = 557
Score = 52.4 bits (124), Expect = 4e-08, Method: Composition-based stats.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 5 LLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTII 48
L+DI+K QD EVGDGTT+VV+LA E L+EA+ + +H +I
Sbjct: 82 LVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVHAQNLI 125
>AT3G18190.1 | chr3:6232226-6233836 FORWARD LENGTH=537
Length = 536
Score = 51.6 bits (122), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 5 LLDISKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAGNSHR 54
L+++SK QD GDGTT+VVV+AG LL+E + L+ IHP T+I+ + H+
Sbjct: 87 LVELSKSQDSAAGDGTTTVVVIAGALLKECQSLLTNGIHP-TVISDSLHK 135
>AT3G03960.1 | chr3:1024432-1027604 FORWARD LENGTH=550
Length = 549
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 9 SKVQDDEVGDGTTSVVVLAGELLREAEKLVNMKIHPMTIIAG 50
+K Q +E+GDG + AGELL+ AE+L+ M +HP II+G
Sbjct: 90 AKAQQEEIGDGANLTISFAGELLQNAEELIRMGLHPSEIISG 131
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.326 0.138 0.422
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,513,338
Number of extensions: 44170
Number of successful extensions: 150
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 7
Length of query: 74
Length of database: 11,106,569
Length adjustment: 46
Effective length of query: 28
Effective length of database: 9,845,433
Effective search space: 275672124
Effective search space used: 275672124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 104 (44.7 bits)