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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os03g0607400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Metal transporter Nramp2 (AtNramp2).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.37 (0.0437) R2 : 0.897
β1 : 0.668 (0.205) R2dD : 0.00451 R2D : -0.017
β2 : 6.51 (0.108) R2dC : 0.828 R2C : 0.809
β3 : 1.02 (0.102) R2dE : 0.0264 R2E : 0.0318
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -4.18 (0.361) R2dD*E : 0.0543 R2D*E : 0.0362
γ1 : -0.411 (0.0994) R2dN8 : 0.00639 R2N8 : 0.0071
σ : 0.777
deviance : 278.32
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_____
C
peak time of C : 6.97
E
wheather : temperature
threshold : 20.02
memory length : 1445
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 5.37
open length of G : 0.958

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
274.34 0.778 6.36 0.666 6.51 0.99 1.27 -4.07 -0.399 6.98 20 1443 5.33 0.997
366.32 0.891 6.35 0.602 6.49 1.65 1.56 -- -0.423 7 20.47 1419 6.35 1.38
278.32 0.777 6.37 0.668 6.51 1.02 -- -4.18 -0.411 6.97 20.02 1445 5.37 0.958
335.08 0.853 6.47 -0.414 6.48 1.49 -- -- -0.516 7.02 21 1401 6.49 2.56
2455.14 2.31 6.49 0.684 -- 1.44 -- -4.3 -0.222 -- 20.2 1830 5.24 0.767
404.99 0.943 6.56 -1.19 6.49 -- 1.52 -- -1.06 6.99 -- -- -- --
410.97 0.949 6.56 -1.17 6.49 -- -- -- -1.07 6.98 -- -- -- --
614.83 1.15 6.81 -1.37 -- 4.86 -- -- -1.02 -- 30.1 638 0.0148 4.1
335.51 0.853 6.47 -- 6.51 1.71 -- -- -0.637 6.96 20.89 1412 6.58 2.77
2627.1 2.39 6.7 -1.03 -- -- -- -- -0.945 -- -- -- -- --
446.79 0.989 6.53 -- 6.48 -- -- -- -0.935 6.99 -- -- -- --
648.77 1.19 6.71 -- -- 4.87 -- -- -0.943 -- 27.77 635 0.0167 4.13
2655.26 2.41 6.68 -- -- -- -- -- -0.83 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 282.60 temperature 20 1440 < th dose independent rect. 5 1
2 284.11 temperature 20 1440 > th dose independent rect. 5 2
5 290.85 temperature 20 1440 > th dose independent rect. 3 4
6 290.95 temperature 20 1440 < th dose independent rect. 3 4
20 294.87 temperature 20 1440 > th dose independent rect. 22 9
22 295.16 temperature 20 1440 < th dose independent rect. 22 9
69 298.37 temperature 20 1440 > th dose independent rect. 3 1
83 299.40 temperature 20 10 > th dose independent rect. 21 13
86 299.86 temperature 20 1440 > th dose independent sin 8 NA
92 300.12 temperature 20 1440 < th dose independent rect. 3 1
94 300.20 temperature 20 90 > th dose independent rect. 21 13
104 300.57 temperature 20 90 > th dose independent sin 11 NA
105 300.61 temperature 20 1440 > th dose independent rect. 22 3
111 300.74 temperature 20 1440 < th dose independent sin 8 NA
114 300.80 temperature 20 90 < th dose independent rect. 15 16
120 301.12 temperature 20 10 > th dose independent sin 10 NA
128 301.48 temperature 20 90 < th dose independent sin 12 NA
129 301.49 temperature 20 1440 < th dose independent rect. 22 3
134 301.60 temperature 20 90 < th dose independent rect. 12 19
153 302.21 temperature 20 4320 < th dose independent rect. 22 1
160 302.42 temperature 20 10 < th dose independent rect. 16 14
162 302.51 temperature 20 10 < th dose independent rect. 14 16
170 302.75 temperature 20 10 < th dose independent sin 11 NA
215 303.43 temperature 20 90 < th dose independent rect. 12 21
226 303.54 temperature 20 720 > th dose independent rect. 13 12
294 304.72 radiation 20 1440 < th dose independent rect. 11 2
306 304.94 temperature 20 10 < th dose independent rect. 12 18
409 306.69 temperature 20 270 > th dose independent rect. 12 22
475 307.54 radiation 20 1440 < th dose dependent rect. 11 1
860 311.68 temperature 20 270 > th dose independent rect. 4 22
977 312.57 humidity 90 14400 > th dose dependent rect. 5 2