BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0607400 Os03g0607400|AK069904
(132 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G47240.1 | chr1:17309043-17311308 REVERSE LENGTH=531 152 4e-38
AT5G67330.1 | chr5:26861822-26863580 FORWARD LENGTH=513 150 2e-37
AT2G23150.1 | chr2:9856422-9858565 REVERSE LENGTH=510 144 1e-35
AT4G18790.1 | chr4:10317785-10319660 REVERSE LENGTH=531 133 2e-32
AT1G15960.1 | chr1:5482202-5485066 REVERSE LENGTH=528 75 1e-14
AT1G80830.1 | chr1:30373066-30375644 REVERSE LENGTH=533 71 1e-13
>AT1G47240.1 | chr1:17309043-17311308 REVERSE LENGTH=531
Length = 530
Score = 152 bits (385), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 72/92 (78%), Positives = 85/92 (92%)
Query: 29 ENYGVRKLEAVFAVLIATMALSFAWMFFKTKPNGKDIIIGILVPRLSSRVISQAVGLVGC 88
ENYGVRKLEAVFAVLIATM LSFAWMF +TKP+GK+++IGIL+PRLSS+ I QAVG+VGC
Sbjct: 198 ENYGVRKLEAVFAVLIATMGLSFAWMFGETKPSGKELMIGILLPRLSSKTIRQAVGVVGC 257
Query: 89 VITPHNVFLHSALVQSRKIDPHKEYQVREALS 120
VI PHNVFLHSALVQSRKIDP ++ +V+EAL+
Sbjct: 258 VIMPHNVFLHSALVQSRKIDPKRKSRVQEALN 289
>AT5G67330.1 | chr5:26861822-26863580 FORWARD LENGTH=513
Length = 512
Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 66/91 (72%), Positives = 83/91 (91%)
Query: 29 ENYGVRKLEAVFAVLIATMALSFAWMFFKTKPNGKDIIIGILVPRLSSRVISQAVGLVGC 88
ENYG+RKLEAVFA+LIATMAL+FAWMF +TKP+G ++++G LVP+LSSR I QAVG+VGC
Sbjct: 182 ENYGIRKLEAVFAILIATMALAFAWMFGQTKPSGTELLVGALVPKLSSRTIKQAVGIVGC 241
Query: 89 VITPHNVFLHSALVQSRKIDPHKEYQVREAL 119
+I PHNVFLHSALVQSR++DP K ++V+EAL
Sbjct: 242 IIMPHNVFLHSALVQSREVDPKKRFRVKEAL 272
>AT2G23150.1 | chr2:9856422-9858565 REVERSE LENGTH=510
Length = 509
Score = 144 bits (363), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 65/92 (70%), Positives = 83/92 (90%)
Query: 29 ENYGVRKLEAVFAVLIATMALSFAWMFFKTKPNGKDIIIGILVPRLSSRVISQAVGLVGC 88
ENYG+RKLEAVFAVLIATM +SFAWMF + KP+G +++IGILVP+LSSR I +AVG+VGC
Sbjct: 186 ENYGIRKLEAVFAVLIATMGVSFAWMFGQAKPSGSELLIGILVPKLSSRTIQKAVGVVGC 245
Query: 89 VITPHNVFLHSALVQSRKIDPHKEYQVREALS 120
+I PHNVFLHSALVQSR++D ++Y+V+EAL+
Sbjct: 246 IIMPHNVFLHSALVQSREVDKRQKYRVQEALN 277
>AT4G18790.1 | chr4:10317785-10319660 REVERSE LENGTH=531
Length = 530
Score = 133 bits (335), Expect = 2e-32, Method: Composition-based stats.
Identities = 62/92 (67%), Positives = 79/92 (85%)
Query: 29 ENYGVRKLEAVFAVLIATMALSFAWMFFKTKPNGKDIIIGILVPRLSSRVISQAVGLVGC 88
E G+RKLE +FAVLIATMALSFAWMF +TKP+ +++ IGI++P+L S+ I +AVG+VGC
Sbjct: 200 EKCGMRKLEGLFAVLIATMALSFAWMFNETKPSVEELFIGIIIPKLGSKTIREAVGVVGC 259
Query: 89 VITPHNVFLHSALVQSRKIDPHKEYQVREALS 120
VITPHNVFLHSALVQSRK DP + +V+EAL+
Sbjct: 260 VITPHNVFLHSALVQSRKTDPKEINRVQEALN 291
>AT1G15960.1 | chr1:5482202-5485066 REVERSE LENGTH=528
Length = 527
Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 2/91 (2%)
Query: 29 ENYGVRKLEAVFAVLIATMALSFAWMFFKTKPNGKDIIIGILVPRLSSR-VISQAVGLVG 87
+ YG+RKLE + A L+ T+AL F +KP+ K+++ G+ VP+L A+ L+G
Sbjct: 166 QQYGIRKLEFLIAFLVFTIALCFFVELHYSKPDPKEVLYGLFVPQLKGNGATGLAISLLG 225
Query: 88 CVITPHNVFLHSALVQSRKIDPHKEYQVREA 118
++ PHN+FLHSALV SRKI P ++EA
Sbjct: 226 AMVMPHNLFLHSALVLSRKI-PRSVTGIKEA 255
>AT1G80830.1 | chr1:30373066-30375644 REVERSE LENGTH=533
Length = 532
Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 57/91 (62%), Gaps = 2/91 (2%)
Query: 29 ENYGVRKLEAVFAVLIATMALSFAWMFFKTKPNGKDIIIGILVPRLSSR-VISQAVGLVG 87
+ YGVRKLE + A L+ T+A+ F +KP+ +++ G+ VP+L A+ L+G
Sbjct: 174 QKYGVRKLEFLIAFLVFTIAICFFVELHYSKPDPGEVLHGLFVPQLKGNGATGLAISLLG 233
Query: 88 CVITPHNVFLHSALVQSRKIDPHKEYQVREA 118
++ PHN+FLHSALV SRKI P ++EA
Sbjct: 234 AMVMPHNLFLHSALVLSRKI-PRSASGIKEA 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.140 0.423
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,318,796
Number of extensions: 72920
Number of successful extensions: 242
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 240
Number of HSP's successfully gapped: 6
Length of query: 132
Length of database: 11,106,569
Length adjustment: 87
Effective length of query: 45
Effective length of database: 8,721,377
Effective search space: 392461965
Effective search space used: 392461965
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 106 (45.4 bits)