Os03g0597600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase).
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Os03g0597600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to L-asparaginase (EC 3.5.1.1) (L-asparagine amidohydrolase).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 142.14 | 0.56 | 10.7 | 0.994 | 1.11 | 2.29 | -0.489 | -12.2 | 0.398 | 11.5 | 25.96 | 4827 | -- | -- |
| 174.06 | 0.614 | 10.5 | 2.21 | 1.11 | 2.09 | -0.482 | -- | 0.091 | 12.5 | 16 | 24275 | -- | -- |
| 143.13 | 0.557 | 10.7 | 0.938 | 1.11 | 2.33 | -- | -12.5 | 0.396 | 11.5 | 26.09 | 4826 | -- | -- |
| 169.68 | 0.607 | 10.4 | 2.74 | 1.13 | 1.69 | -- | -- | 0.333 | 12 | 16.4 | 23774 | -- | -- |
| 216.92 | 0.686 | 10.7 | 0.741 | -- | 2.37 | -- | -13.5 | 0.415 | -- | 26.4 | 4656 | -- | -- |
| 218.33 | 0.693 | 10.3 | 4.27 | 1.06 | -- | -0.524 | -- | 1 | 11.9 | -- | -- | -- | -- |
| 219.51 | 0.694 | 10.3 | 4.25 | 1.06 | -- | -- | -- | 1 | 12 | -- | -- | -- | -- |
| 219.54 | 0.693 | 10.4 | 3.83 | -- | 2.03 | -- | -- | 0.692 | -- | 16.4 | 23774 | -- | -- |
| 232.65 | 0.71 | 10.6 | -- | 1.13 | 3.46 | -- | -- | -0.507 | 12.1 | 6.028 | 47520 | -- | -- |
| 290.71 | 0.797 | 10.3 | 4.22 | -- | -- | -- | -- | 0.986 | -- | -- | -- | -- | -- |
| 695.79 | 1.23 | 10.4 | -- | 1.01 | -- | -- | -- | 0.527 | 11.8 | -- | -- | -- | -- |
| 313.01 | 0.824 | 10.7 | -- | -- | 3.39 | -- | -- | -0.502 | -- | 11 | 47520 | -- | -- |
| 760.02 | 1.29 | 10.4 | -- | -- | -- | -- | -- | 0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 112.60 | radiation | 30 | 43200 | > th | dose dependent | rect. | 14 | 19 |
| 3 | 113.03 | radiation | 10 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 4 | 113.05 | radiation | 10 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 7 | 113.05 | radiation | 10 | 43200 | < th | dose dependent | rect. | 22 | 9 |
| 18 | 113.67 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 1 |
| 19 | 113.69 | radiation | 20 | 43200 | > th | dose independent | rect. | 16 | 16 |
| 21 | 113.82 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 2 |
| 22 | 113.84 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 6 |
| 24 | 113.85 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 33 | 113.86 | radiation | 40 | 43200 | < th | dose independent | rect. | 14 | 17 |
| 37 | 113.90 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 16 |
| 39 | 113.94 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 4 |
| 41 | 113.94 | radiation | 20 | 43200 | < th | dose independent | rect. | 15 | 12 |
| 54 | 114.04 | radiation | 40 | 43200 | < th | dose independent | sin | 13 | NA |
| 56 | 114.06 | radiation | 30 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 74 | 114.12 | radiation | 30 | 43200 | > th | dose dependent | rect. | 7 | 2 |
| 142 | 114.58 | radiation | 1 | 43200 | > th | dose dependent | rect. | 18 | 13 |
| 152 | 114.95 | humidity | 60 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 162 | 115.35 | radiation | 40 | 43200 | < th | dose dependent | rect. | 16 | 16 |
| 169 | 115.41 | radiation | 40 | 43200 | < th | dose dependent | rect. | 1 | 6 |
| 174 | 115.44 | radiation | 30 | 43200 | < th | dose dependent | rect. | 21 | 10 |
| 176 | 115.45 | radiation | 30 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 216 | 115.67 | radiation | 1 | 43200 | > th | dose dependent | rect. | 4 | 3 |
| 229 | 115.75 | radiation | 20 | 43200 | < th | dose independent | sin | 13 | NA |
| 232 | 115.90 | radiation | 10 | 43200 | < th | dose independent | rect. | 17 | 17 |
| 238 | 115.99 | radiation | 10 | 43200 | < th | dose independent | sin | 11 | NA |
| 241 | 116.05 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 242 | 116.05 | radiation | 30 | 43200 | > th | dose dependent | sin | 13 | NA |
| 315 | 116.82 | radiation | 10 | 43200 | < th | dose independent | rect. | 4 | 4 |
| 327 | 116.85 | radiation | 30 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 328 | 116.85 | radiation | 30 | 43200 | < th | dose independent | rect. | 1 | 8 |
| 336 | 116.86 | radiation | 30 | 43200 | < th | dose independent | rect. | 21 | 12 |
| 447 | 117.77 | radiation | 30 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 551 | 118.08 | radiation | 1 | 43200 | > th | dose dependent | sin | 13 | NA |
| 633 | 118.40 | radiation | 40 | 43200 | < th | dose dependent | sin | 12 | NA |
| 726 | 119.01 | radiation | 40 | 43200 | < th | dose independent | rect. | 6 | 13 |
| 731 | 119.01 | radiation | 40 | 43200 | < th | dose independent | rect. | 1 | 18 |
| 738 | 119.01 | radiation | 40 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 744 | 119.02 | radiation | 40 | 43200 | < th | dose independent | no | NA | NA |
| 745 | 119.02 | radiation | 40 | 43200 | < th | dose independent | rect. | 7 | 10 |
| 842 | 119.05 | radiation | 10 | 43200 | < th | dose dependent | sin | 11 | NA |
| 978 | 119.38 | radiation | 40 | 43200 | > th | dose dependent | rect. | 10 | 1 |