BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0597600 Os03g0597600|AK069458
(317 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G08100.1 | chr5:2593242-2594586 REVERSE LENGTH=316 389 e-108
AT3G16150.1 | chr3:5471794-5473033 FORWARD LENGTH=326 279 1e-75
AT4G00590.1 | chr4:252835-254880 FORWARD LENGTH=409 76 3e-14
AT5G61540.1 | chr5:24744994-24747142 FORWARD LENGTH=360 69 3e-12
>AT5G08100.1 | chr5:2593242-2594586 REVERSE LENGTH=316
Length = 315
Score = 389 bits (998), Expect = e-108, Method: Compositional matrix adjust.
Identities = 206/317 (64%), Positives = 232/317 (73%), Gaps = 8/317 (2%)
Query: 1 MGWAVALHGGAGDIPRSLPPDRREPRLATLRRCLDLATAALRSGRAAXXXXXXXXXXXXN 60
+GWA+ALHGGAGDIP LP +RR PR + LR CLDL +AL+SG+ N
Sbjct: 2 VGWAIALHGGAGDIPIDLPDERRIPRESALRHCLDLGISALKSGKPPLDVAELVVRELEN 61
Query: 61 CPHYNAGVGSVLTADGTVEMEAAVMDGNTLRCGAVSGLSTVVNAVSLARLVMEKTPHIYL 120
P +NAG GSVLTA GTVEMEA++MDG T RCGAVSGL+TVVN +SLARLVMEKTPHIYL
Sbjct: 62 HPDFNAGKGSVLTAQGTVEMEASIMDGKTKRCGAVSGLTTVVNPISLARLVMEKTPHIYL 121
Query: 121 AFDGAEAFAREQGVETKDPSHFITEANKERLRQAKEANRVQVDYTQPIPK-DDN---SRV 176
AFD AEAFAR GVET D SHFIT N RL+QAKE NRVQ+DYT P PK DN S++
Sbjct: 122 AFDAAEAFARAHGVETVDSSHFITPENIARLKQAKEFNRVQLDYTVPSPKVPDNCGDSQI 181
Query: 177 GTVGCVAIDSAGNLATATSTGGLVNKMAGRIGDTPVIGAGTYANALCAVSATGVGEAIIR 236
GTVGCVA+DSAGNLA+ATSTGG VNKM GRIGDTPVIGAGTYAN LCA+SATG GE IIR
Sbjct: 182 GTVGCVAVDSAGNLASATSTGGYVNKMVGRIGDTPVIGAGTYANHLCAISATGKGEDIIR 241
Query: 237 HTVARDVAALLEHAPPAGLSLXXXXXXXXXXXXXXXX-XXXXXSAAGEVAMAYNTTGMFR 295
TVARDVAAL+E+ GLSL SA GEV M +NTTGMFR
Sbjct: 242 GTVARDVAALMEY---KGLSLTEAAAYVVDQSVPRGSCGLVAVSANGEVTMPFNTTGMFR 298
Query: 296 ACATEGGRHEVAIWPDD 312
ACA+E G E+AIWP++
Sbjct: 299 ACASEDGYSEIAIWPNN 315
>AT3G16150.1 | chr3:5471794-5473033 FORWARD LENGTH=326
Length = 325
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 159/326 (48%), Positives = 197/326 (60%), Gaps = 22/326 (6%)
Query: 2 GWAVALHGGAGDIPRSLPPDRREPRLATLRRCLDLATAALRSGRAAXXXXXXXXXXXXNC 61
GWA+A+HGGAG P +LP +R+E L RCL+L ALRS +A
Sbjct: 3 GWAIAVHGGAGIDP-NLPAERQEEAKQLLTRCLNLGIIALRSNVSAIDVVELVIRELETD 61
Query: 62 PHYNAGVGSVLTADGTVEMEAAVMDGNTLRCGAVSGLSTVVNAVSLARLVMEKTPHIYLA 121
P +N+G GS LT GTVEMEA++MDG RCGAVSG++TV N +SLARLVM+K+PH YLA
Sbjct: 62 PLFNSGRGSALTEKGTVEMEASIMDGTKRRCGAVSGITTVKNPISLARLVMDKSPHSYLA 121
Query: 122 FDGAEAFAREQGVETKDPSHFITEANKERLRQAKEANRVQVDYTQP-------IPKDDNS 174
F GAE FAR+QGVE D +F+T+ N L+ AKEAN + DY P D
Sbjct: 122 FSGAEDFARKQGVEIVDNEYFVTDDNVGMLKLAKEANSILFDYRIPPMGCAGAAATDSPI 181
Query: 175 RVG----------TVGCVAIDSAGNLATATSTGGLVNKMAGRIGDTPVIGAGTYANALCA 224
++ TVGCV +D G+ A TSTGGL+NKM GRIGD+P+IGAGTYA+ C
Sbjct: 182 QMNGLPISIYAPETVGCVVVDGKGHCAAGTSTGGLMNKMMGRIGDSPLIGAGTYASEFCG 241
Query: 225 VSATGVGEAIIRHTVARDVAALLEHAPPAGLSLXXXXXXXXX-XXXXXXXXXXXXSAAGE 283
VS TG GEAIIR T+ARDV+A++E+ GL+L S GE
Sbjct: 242 VSCTGEGEAIIRATLARDVSAVMEY---KGLNLQEAVDYVIKHRLDEGFAGLIAVSNKGE 298
Query: 284 VAMAYNTTGMFRACATEGGRHEVAIW 309
V +N+ GMFR CATE G EVAIW
Sbjct: 299 VVCGFNSNGMFRGCATEDGFMEVAIW 324
>AT4G00590.1 | chr4:252835-254880 FORWARD LENGTH=409
Length = 408
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 74/302 (24%), Positives = 131/302 (43%), Gaps = 50/302 (16%)
Query: 3 WAVALHGGAGDIPRSLPPDRREPRLATLRRCLDLATAALRSGRAAXXXXXXXXXXXXNCP 62
+ VA+H GAG + + R R CL +T + + P
Sbjct: 13 FFVAVHVGAG---YHAAANEKALRSVMRRACLAASTILRQDSGECIDAVSAAIQVLEDDP 69
Query: 63 HYNAGVGSVLTADGTVEMEAAVMDGNTLRCGAVSGLSTVVNAVSLARLVME--------- 113
NAG GS LT DG VE +A++MDG++ G V + V NA+ +A L+++
Sbjct: 70 STNAGRGSNLTEDGHVECDASLMDGDSGMFGGVGAVPGVRNAIKIAALLVKEQITGSTLL 129
Query: 114 -KTPHIYLAFDGAEAFAREQ-----GVETKDPSHFITEANKERLRQAK----EANRVQVD 163
+ P + L +GA + + + G T+ +TE + + R+ K E +
Sbjct: 130 GRIPPMLLVGEGARRWGKSKSVLIPGTVTEADQWLVTERARNQWRRFKAMLSEVGAKSIL 189
Query: 164 YTQPIPK------------------DDNSRVGTVGCVAIDSAGNLATATSTGGLVNKMAG 205
+ P+ D++ + TVG + +D+ G++A +S+GG+ K++G
Sbjct: 190 SAEEHPRGTENNETCEENVSSCAAADEDKIMDTVGVICVDNEGHIACGSSSGGIAMKISG 249
Query: 206 RIGDTPVIGAGTYANA--------LCAVSATGVGEAIIRHTVARD--VAALLEHAPPAGL 255
R+G G+G +A++ L +G GE ++R AR+ + L A PA
Sbjct: 250 RVGLAATYGSGCWASSKGPFGAPFLVGCCVSGAGEYLMRGFAARECCTSLALSQAGPASA 309
Query: 256 SL 257
++
Sbjct: 310 AM 311
>AT5G61540.1 | chr5:24744994-24747142 FORWARD LENGTH=360
Length = 359
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 95/208 (45%), Gaps = 40/208 (19%)
Query: 67 GVGSVLTADGTVEMEAAVMDGNTLRCGAVSGLSTVVNAVSLARLVMEKTPHIYLAFDGAE 126
G G +G ++A VMDG T+ GAV+ + V + + A LVM+ + H LA +GA
Sbjct: 80 GPGGSPDENGETMIDALVMDGVTMEVGAVAAMRYVKDGIRAAHLVMKYSQHTLLAGEGAS 139
Query: 127 AFAREQGVETKDPSHFITEANKERLRQAKEANRVQVDYTQPI-PKDD-------NSRVG- 177
AFA G+ P + + + ++ KE N+ Q ++ + + P +D NS +
Sbjct: 140 AFAISMGL--PGPMNLSSPESVKKWSDWKE-NQCQPNFRKNVVPANDCGPYKPNNSAMNV 196
Query: 178 ---------------------------TVGCVAIDSAGNLATATSTGGLVNKMAGRIGDT 210
T+ ID G++A TST G K+ GR+GD
Sbjct: 197 FVDKSTESCEMGAIEYKPPLVGPHNHDTISMAVIDRMGHIAVGTSTNGATYKIPGRVGDG 256
Query: 211 PVIGAGTYA-NALCAVSATGVGEAIIRH 237
P++G+ YA + + ATG G+ ++R
Sbjct: 257 PIVGSSAYADDEVGGCGATGDGDTMMRF 284
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,879,700
Number of extensions: 194775
Number of successful extensions: 450
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 444
Number of HSP's successfully gapped: 5
Length of query: 317
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 218
Effective length of database: 8,392,385
Effective search space: 1829539930
Effective search space used: 1829539930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 112 (47.8 bits)